miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 18402 1.11 0.000121
Target:  5'- cGGCCUUGCGACGCGACGCGGCCGCGGu -3'
miRNA:   3'- -CCGGAACGCUGCGCUGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 8206 0.68 0.234598
Target:  5'- cGGCC--GCGACGCGA--CGGCCGaaGa -3'
miRNA:   3'- -CCGGaaCGCUGCGCUgcGCCGGCgcC- -5'
27594 5' -61.7 NC_005882.1 + 14748 0.68 0.261997
Target:  5'- cGGCCUugcuUGCcgcgcagguuggacgGGCGCGACGacaGuGCCGUGa -3'
miRNA:   3'- -CCGGA----ACG---------------CUGCGCUGCg--C-CGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 3383 0.66 0.346586
Target:  5'- --gCUUGCG-CGCGggcgcuGCGCGGCC-UGGg -3'
miRNA:   3'- ccgGAACGCuGCGC------UGCGCCGGcGCC- -5'
27594 5' -61.7 NC_005882.1 + 31036 0.72 0.124656
Target:  5'- cGCacaacaUGCGGCGUGGCGCGGUCGauCGGc -3'
miRNA:   3'- cCGga----ACGCUGCGCUGCGCCGGC--GCC- -5'
27594 5' -61.7 NC_005882.1 + 27671 0.72 0.128084
Target:  5'- cGCUgcaGgGACGC--CGCGGCCGCGGc -3'
miRNA:   3'- cCGGaa-CgCUGCGcuGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 28344 0.71 0.142686
Target:  5'- cGCCgaUGUGACGCuGgagaccgccuGCGCGGCCGcCGGc -3'
miRNA:   3'- cCGGa-ACGCUGCG-C----------UGCGCCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 26800 0.71 0.144227
Target:  5'- cGGCCgUUGCGAagccgaccacgcCGCGGaucggccgggauggGCGGCCGCGa -3'
miRNA:   3'- -CCGG-AACGCU------------GCGCUg-------------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 3328 0.7 0.171937
Target:  5'- cGCCgcGCGACgGCGGC-CGGCCGaCGa -3'
miRNA:   3'- cCGGaaCGCUG-CGCUGcGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 12466 0.68 0.234598
Target:  5'- aGCC--GCGGuucuCGCGGaaaGCGGCCGCGu -3'
miRNA:   3'- cCGGaaCGCU----GCGCUg--CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 14193 0.69 0.205895
Target:  5'- gGGCCa-GCGuCGCGAuguucuuCGCGGCCuuGGa -3'
miRNA:   3'- -CCGGaaCGCuGCGCU-------GCGCCGGcgCC- -5'
27594 5' -61.7 NC_005882.1 + 25477 0.71 0.15462
Target:  5'- uGCCUcGCGcGCagcucgucgGCGACGCGGCCGaGGc -3'
miRNA:   3'- cCGGAaCGC-UG---------CGCUGCGCCGGCgCC- -5'
27594 5' -61.7 NC_005882.1 + 207 0.76 0.069783
Target:  5'- aGCCUUGCcuucGGCcUGACGCGGCCcucGCGGg -3'
miRNA:   3'- cCGGAACG----CUGcGCUGCGCCGG---CGCC- -5'
27594 5' -61.7 NC_005882.1 + 13104 0.69 0.205895
Target:  5'- aGCUuguucagUUGCGAUuCGAuguCGCGGCUGCGGc -3'
miRNA:   3'- cCGG-------AACGCUGcGCU---GCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 25731 0.74 0.087222
Target:  5'- cGGCCUgccgaacaGCGcCGauuacgGGCGCGGCCGUGGc -3'
miRNA:   3'- -CCGGAa-------CGCuGCg-----CUGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 25110 0.71 0.150545
Target:  5'- uGGCUUUGCGGC-CGGCuCGGgCGcCGGg -3'
miRNA:   3'- -CCGGAACGCUGcGCUGcGCCgGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 6462 0.68 0.228717
Target:  5'- cGCCcagGCaGCGCG-CGCGGCCGgccaCGGc -3'
miRNA:   3'- cCGGaa-CGcUGCGCuGCGCCGGC----GCC- -5'
27594 5' -61.7 NC_005882.1 + 21582 0.68 0.246742
Target:  5'- cGUCggaaccgGCGACaGCGGCagguuguaGCGGCCGCGc -3'
miRNA:   3'- cCGGaa-----CGCUG-CGCUG--------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 11746 0.73 0.105815
Target:  5'- aGCCc-GCGAucgagccaguaCGCGACGaCGGCCGCGa -3'
miRNA:   3'- cCGGaaCGCU-----------GCGCUGC-GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 11997 0.71 0.142686
Target:  5'- gGGCaCUUGCGcggccACG-GGCGCGGCgGCGc -3'
miRNA:   3'- -CCG-GAACGC-----UGCgCUGCGCCGgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.