miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 19618 1.09 0.000159
Target:  5'- gCCGCCUUGCGCUCACGCGCCUGCGCGu -3'
miRNA:   3'- -GGCGGAACGCGAGUGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 5977 0.68 0.221483
Target:  5'- aUGCCcgUGCGa--ACG-GCCUGCGCGu -3'
miRNA:   3'- gGCGGa-ACGCgagUGCgCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 9314 0.68 0.245571
Target:  5'- gCCGUCUgGCuauaccccaaccGCUCACGCuCCUcGCGCa -3'
miRNA:   3'- -GGCGGAaCG------------CGAGUGCGcGGA-CGCGc -5'
27595 5' -61.1 NC_005882.1 + 9564 0.66 0.338907
Target:  5'- gCGCgUcGUGCUUGCGgcCGCCaGCGCGc -3'
miRNA:   3'- gGCGgAaCGCGAGUGC--GCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 16071 0.76 0.0659
Target:  5'- gCCGCCUUGCgGCggcgCACGCacccGCCgacgUGCGCGu -3'
miRNA:   3'- -GGCGGAACG-CGa---GUGCG----CGG----ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 10956 0.75 0.067809
Target:  5'- uCCGCa-UGCGCcCGCGCGCgCUGCGaCGa -3'
miRNA:   3'- -GGCGgaACGCGaGUGCGCG-GACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 28346 0.74 0.082739
Target:  5'- aCCGCCgaugUGaCGCUgGagacCGCCUGCGCGg -3'
miRNA:   3'- -GGCGGa---AC-GCGAgUgc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18294 0.74 0.083918
Target:  5'- gCCgGCCUUGCGCggcgaaguuguccUCGgugaccagcaccaGCGCCUGCGCGa -3'
miRNA:   3'- -GG-CGGAACGCG-------------AGUg------------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 32142 0.72 0.129425
Target:  5'- -gGCUUcUGCgGCcgUACGUGCCUGCGCGa -3'
miRNA:   3'- ggCGGA-ACG-CGa-GUGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19489 0.69 0.199436
Target:  5'- gCCGCCccGCGUUCggcgaAUGCGCUggucgGCGCa -3'
miRNA:   3'- -GGCGGaaCGCGAG-----UGCGCGGa----CGCGc -5'
27595 5' -61.1 NC_005882.1 + 3409 0.71 0.152534
Target:  5'- gCGUCUcGCGuCUCACGUugcugaacGCUUGCGCGc -3'
miRNA:   3'- gGCGGAaCGC-GAGUGCG--------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 26262 0.73 0.109589
Target:  5'- gUCGCCUUcGCGUUCAUGUGCgacagccagUUGCGCa -3'
miRNA:   3'- -GGCGGAA-CGCGAGUGCGCG---------GACGCGc -5'
27595 5' -61.1 NC_005882.1 + 28121 0.79 0.034948
Target:  5'- aUCGCCUguuuUGCGCUCAC-CGCC-GCGCGc -3'
miRNA:   3'- -GGCGGA----ACGCGAGUGcGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12769 0.71 0.156308
Target:  5'- gCCGCCgcGCGCUgcgucucCGCGCGUUccuugaUGCGCGc -3'
miRNA:   3'- -GGCGGaaCGCGA-------GUGCGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 23290 0.78 0.042809
Target:  5'- cCCGCCggcccGCGCcCGgccaGCGCCUGCGCGa -3'
miRNA:   3'- -GGCGGaa---CGCGaGUg---CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 21157 0.74 0.09263
Target:  5'- aCGCCgaGCGCcuUCGCGcCGgCUGCGCa -3'
miRNA:   3'- gGCGGaaCGCG--AGUGC-GCgGACGCGc -5'
27595 5' -61.1 NC_005882.1 + 12314 0.69 0.189146
Target:  5'- aUCGCCaUGCGCUCGCaugcaccgGcCGCCgugaUGCGCu -3'
miRNA:   3'- -GGCGGaACGCGAGUG--------C-GCGG----ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 28635 0.68 0.245571
Target:  5'- gCCGCCUUGCGCcgaUCGgacCGCauCCaGCGCa -3'
miRNA:   3'- -GGCGGAACGCG---AGU---GCGc-GGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 19857 0.76 0.062237
Target:  5'- aCGCCggcGCGCUCGCGCGUg-GCGUGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCGCGgaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 17176 0.74 0.0802
Target:  5'- uCCGCUUUaaaagcgGCGCgaccaGCGCCUGCGCGu -3'
miRNA:   3'- -GGCGGAA-------CGCGagug-CGCGGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.