Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27607 | 5' | -54 | NC_005882.1 | + | 27109 | 0.66 | 0.694298 |
Target: 5'- aUGCUGCugGCCCGcGUCCUgggcggccagcucGUGAACGGc -3' miRNA: 3'- cGCGGCG--CGGGCuUAGGG-------------UAUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 8698 | 0.66 | 0.684163 |
Target: 5'- gGCGCUGCucgucgccaacuGCCCGA-UCCgAU--ACAGg -3' miRNA: 3'- -CGCGGCG------------CGGGCUuAGGgUAuuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 15767 | 0.66 | 0.672852 |
Target: 5'- gGCGCCgcuccaGCGUCCGAAUgacagaggguuaCgCAUGAGCAa -3' miRNA: 3'- -CGCGG------CGCGGGCUUA------------GgGUAUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 16336 | 0.66 | 0.666045 |
Target: 5'- gGUGCCGCGCCaggaggcgacguaucUGAA-CCCGU--ACGGc -3' miRNA: 3'- -CGCGGCGCGG---------------GCUUaGGGUAuuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 27609 | 0.66 | 0.650118 |
Target: 5'- -gGCCGCGgCCGcggcGUCCCu---GCAGc -3' miRNA: 3'- cgCGGCGCgGGCu---UAGGGuauuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 13034 | 0.67 | 0.638718 |
Target: 5'- cGCaGCCGCGacaUCGAAUCgCAacUGAACAa -3' miRNA: 3'- -CG-CGGCGCg--GGCUUAGgGU--AUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 16930 | 0.67 | 0.615911 |
Target: 5'- cGCgGCCG-GCCUGGAUCUCGUcGACc- -3' miRNA: 3'- -CG-CGGCgCGGGCUUAGGGUAuUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 27230 | 0.67 | 0.615911 |
Target: 5'- aGCG-CGCGCCCGAG-CCa--GAGCAc -3' miRNA: 3'- -CGCgGCGCGGGCUUaGGguaUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 34598 | 0.67 | 0.604525 |
Target: 5'- gGUGCCGCGuUCCGAAUCgCA--AACu- -3' miRNA: 3'- -CGCGGCGC-GGGCUUAGgGUauUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 6173 | 0.67 | 0.604525 |
Target: 5'- cCGCCGCGUcaCCGA---CCGUAuACAGg -3' miRNA: 3'- cGCGGCGCG--GGCUuagGGUAUuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 17040 | 0.67 | 0.593164 |
Target: 5'- aGCGCCcgaccaggacGCGCUCGAcgCCgCAcUGAACAc -3' miRNA: 3'- -CGCGG----------CGCGGGCUuaGG-GU-AUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 15472 | 0.67 | 0.593164 |
Target: 5'- uGCcCCGCGCgUCGAAggcgccgCCCGUGAagcGCGGg -3' miRNA: 3'- -CGcGGCGCG-GGCUUa------GGGUAUU---UGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 32261 | 0.68 | 0.570559 |
Target: 5'- -aGCaCGCGCagugCGAGUCCCG---GCAGg -3' miRNA: 3'- cgCG-GCGCGg---GCUUAGGGUauuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 25508 | 0.68 | 0.570559 |
Target: 5'- gGC-CCGCGCCauCGcGUCCCccAGGCGGg -3' miRNA: 3'- -CGcGGCGCGG--GCuUAGGGuaUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 34697 | 0.68 | 0.548169 |
Target: 5'- cGC-CCGCGCCUGuAGUCCCG-AGAUu- -3' miRNA: 3'- -CGcGGCGCGGGC-UUAGGGUaUUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 1702 | 0.68 | 0.537076 |
Target: 5'- cGCGCCcaCGCugaauacgCCGAAUCCCGUcAGCGu -3' miRNA: 3'- -CGCGGc-GCG--------GGCUUAGGGUAuUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 11934 | 0.68 | 0.533763 |
Target: 5'- cCGCCGCGCCCGuggccgcgcaagugCCCGccgAGGCGc -3' miRNA: 3'- cGCGGCGCGGGCuua-----------GGGUa--UUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 19249 | 0.68 | 0.526061 |
Target: 5'- gGCgGCUGCGCaCCGAGgaaCCCGacguGACGGa -3' miRNA: 3'- -CG-CGGCGCG-GGCUUa--GGGUau--UUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 21653 | 0.68 | 0.526061 |
Target: 5'- aGCGCgGCGCCU---UCCgGUcGACGGg -3' miRNA: 3'- -CGCGgCGCGGGcuuAGGgUAuUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 25661 | 0.69 | 0.515133 |
Target: 5'- -gGCCGCGCCCGuAAUCggcgCUGUucGGCAGg -3' miRNA: 3'- cgCGGCGCGGGC-UUAG----GGUAu-UUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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