Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27675 | 3' | -54.1 | NC_005882.1 | + | 29171 | 0.66 | 0.700445 |
Target: 5'- uCGGcuaCGcCGGCGCGCCGuugcucgcgugCGGCCg -3' miRNA: 3'- cGUCaa-GCaGCUGCGCGGCua---------GCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 25694 | 0.66 | 0.724405 |
Target: 5'- gGCAGccgcCGUCGcguAUGUGCCGAgcaugUCGGCg -3' miRNA: 3'- -CGUCaa--GCAGC---UGCGCGGCU-----AGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 16677 | 0.66 | 0.722244 |
Target: 5'- aGCAGgcgcucguagaCGUCGGCGCuaCCGGUCuuGCCg -3' miRNA: 3'- -CGUCaa---------GCAGCUGCGc-GGCUAGc-UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 8055 | 0.66 | 0.691643 |
Target: 5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3' miRNA: 3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 15612 | 0.66 | 0.691643 |
Target: 5'- -gAGgcCGUCGAuCGUGCCGucuUCGaacGCCg -3' miRNA: 3'- cgUCaaGCAGCU-GCGCGGCu--AGC---UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 19090 | 0.66 | 0.691643 |
Target: 5'- uGCAGgUUGcCGGcCGaCGCCGAgagagaagCGACCc -3' miRNA: 3'- -CGUCaAGCaGCU-GC-GCGGCUa-------GCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 23267 | 0.66 | 0.713564 |
Target: 5'- cGCcuGcgCGagCGuCGUGCCGAUCGGCg -3' miRNA: 3'- -CGu-CaaGCa-GCuGCGCGGCUAGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 15543 | 0.66 | 0.691643 |
Target: 5'- gGCGgcGUUCGaaGACG-GCaCGAUCGACg -3' miRNA: 3'- -CGU--CAAGCagCUGCgCG-GCUAGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 31245 | 0.66 | 0.691643 |
Target: 5'- cGCAG---GUCGaACGCGuCCuGGUCGACa -3' miRNA: 3'- -CGUCaagCAGC-UGCGC-GG-CUAGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 11988 | 0.66 | 0.735152 |
Target: 5'- cGCGGccaCGggcgCGGCgGCGCCGAgcaacgCGACg -3' miRNA: 3'- -CGUCaa-GCa---GCUG-CGCGGCUa-----GCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 31461 | 0.66 | 0.728716 |
Target: 5'- cGCAGcgUCGUCuucgcgGGCuGCGCCGGcagccgcgucacgcCGACCa -3' miRNA: 3'- -CGUCa-AGCAG------CUG-CGCGGCUa-------------GCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 18624 | 0.66 | 0.735152 |
Target: 5'- cGCuaaccUGUCGACGaGCCGAUCGcGCUc -3' miRNA: 3'- -CGucaa-GCAGCUGCgCGGCUAGC-UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 22031 | 0.66 | 0.724405 |
Target: 5'- gGCGGUgccaUCGACGUGCuCGAucacguUCGcACCg -3' miRNA: 3'- -CGUCAagc-AGCUGCGCG-GCU------AGC-UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 16699 | 0.66 | 0.713564 |
Target: 5'- gGCGa--CGUCGACGCGCgCGuccgcgcaGGCCg -3' miRNA: 3'- -CGUcaaGCAGCUGCGCG-GCuag-----CUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 21664 | 0.66 | 0.713564 |
Target: 5'- cGguGUcCGggagcgCGGCGCcuuCCGGUCGACg -3' miRNA: 3'- -CguCAaGCa-----GCUGCGc--GGCUAGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 15732 | 0.66 | 0.691643 |
Target: 5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3' miRNA: 3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 25733 | 0.66 | 0.724405 |
Target: 5'- gGCGGccUGcCGAacaGCGCCGAUuacgggcgCGGCCg -3' miRNA: 3'- -CGUCaaGCaGCUg--CGCGGCUA--------GCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 17867 | 0.66 | 0.735152 |
Target: 5'- gGCAucaagGUCGAgGCgGCCGG-CGACCg -3' miRNA: 3'- -CGUcaag-CAGCUgCG-CGGCUaGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 31958 | 0.66 | 0.724405 |
Target: 5'- gGCAGccccgUGUCGACGaGCgGGUaGACCu -3' miRNA: 3'- -CGUCaa---GCAGCUGCgCGgCUAgCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 351 | 0.66 | 0.702639 |
Target: 5'- cGCAGc-CGUCGAUGUaauGCCGcagaAUCGGuCCg -3' miRNA: 3'- -CGUCaaGCAGCUGCG---CGGC----UAGCU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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