miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 36676 0.7 0.473014
Target:  5'- --cGcgCGUCGACGUGCUGAaauaUCGcGCCg -3'
miRNA:   3'- cguCaaGCAGCUGCGCGGCU----AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 33341 0.7 0.46281
Target:  5'- uGCAG-UCGUCGccaGCGCCG-UCGAg- -3'
miRNA:   3'- -CGUCaAGCAGCug-CGCGGCuAGCUgg -5'
27675 3' -54.1 NC_005882.1 + 32463 0.72 0.359047
Target:  5'- gGCAGUgcggaugCGUCGACGCcaUCGAUCagguaGACCa -3'
miRNA:   3'- -CGUCAa------GCAGCUGCGc-GGCUAG-----CUGG- -5'
27675 3' -54.1 NC_005882.1 + 32075 0.68 0.580262
Target:  5'- cGCA---CGUCGAuCGCGUa-GUCGACCg -3'
miRNA:   3'- -CGUcaaGCAGCU-GCGCGgcUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31991 0.73 0.342009
Target:  5'- -----aCGUCGACGUccgaucgccgacGCCGGUCGACUa -3'
miRNA:   3'- cgucaaGCAGCUGCG------------CGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31958 0.66 0.724405
Target:  5'- gGCAGccccgUGUCGACGaGCgGGUaGACCu -3'
miRNA:   3'- -CGUCaa---GCAGCUGCgCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31798 0.68 0.591359
Target:  5'- cCAGUcgaUCGUCGACGuCGgCGuaAUCGGuCCg -3'
miRNA:   3'- cGUCA---AGCAGCUGC-GCgGC--UAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 31676 0.71 0.432915
Target:  5'- cCAGgUCGUCGACGagcgaGCCGAguugcccCGGCUg -3'
miRNA:   3'- cGUCaAGCAGCUGCg----CGGCUa------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31618 0.68 0.580262
Target:  5'- uGCGGUUucgcaCGUCG-CGgccaCGUCGAUCGACa -3'
miRNA:   3'- -CGUCAA-----GCAGCuGC----GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 31461 0.66 0.728716
Target:  5'- cGCAGcgUCGUCuucgcgGGCuGCGCCGGcagccgcgucacgcCGACCa -3'
miRNA:   3'- -CGUCa-AGCAG------CUG-CGCGGCUa-------------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31245 0.66 0.691643
Target:  5'- cGCAG---GUCGaACGCGuCCuGGUCGACa -3'
miRNA:   3'- -CGUCaagCAGC-UGCGC-GG-CUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 31027 0.66 0.735152
Target:  5'- uGCGG--CGU-GGCGCgGUCGAUCGGCa -3'
miRNA:   3'- -CGUCaaGCAgCUGCG-CGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 30958 0.71 0.442756
Target:  5'- ----aUC-UCGACaUGCCGAUCGACCg -3'
miRNA:   3'- cgucaAGcAGCUGcGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 30543 0.71 0.413621
Target:  5'- -aGGUgacgGUCGACGUGCCGGa-GACCg -3'
miRNA:   3'- cgUCAag--CAGCUGCGCGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 30352 0.66 0.723325
Target:  5'- cGguGUgauUC-UCGGCGCcaucuacuccgauGCCGAUCGcCCg -3'
miRNA:   3'- -CguCA---AGcAGCUGCG-------------CGGCUAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 29935 0.77 0.182749
Target:  5'- aGCAGcUCGaUCGACGCaCCGG-CGGCCa -3'
miRNA:   3'- -CGUCaAGC-AGCUGCGcGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29863 0.69 0.547272
Target:  5'- -aGGUUCGUcCGGucaaGCGCCGcgCGugCc -3'
miRNA:   3'- cgUCAAGCA-GCUg---CGCGGCuaGCugG- -5'
27675 3' -54.1 NC_005882.1 + 29791 0.67 0.647184
Target:  5'- cGCAGcgUGUCGcCGCucGUCGAcUGACCg -3'
miRNA:   3'- -CGUCaaGCAGCuGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29543 0.68 0.623706
Target:  5'- aGCAGUUCaa--GCGCGCCGAcuugaagUCGAUUc -3'
miRNA:   3'- -CGUCAAGcagcUGCGCGGCU-------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29279 0.72 0.393942
Target:  5'- gGCGGUUCGUCGAagccaaucuCGUCGAUcucgaagCGGCCg -3'
miRNA:   3'- -CGUCAAGCAGCUgc-------GCGGCUA-------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.