miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27685 3' -47.5 NC_005882.1 + 10990 0.66 0.96053
Target:  5'- gGCGGUgCGCagcgaACGGCUGaCGAucGAGGCc -3'
miRNA:   3'- -CGUUA-GCGaag--UGCCGAC-GCU--UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 19788 0.66 0.956196
Target:  5'- cGgAAUCGCUcgccaGCGGCUGCuu--GGCa -3'
miRNA:   3'- -CgUUAGCGAag---UGCCGACGcuuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 26743 0.66 0.951549
Target:  5'- cGUggUCgGCUUCgcaACGGCcGUGAucGGCa -3'
miRNA:   3'- -CGuuAG-CGAAG---UGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 1631 0.66 0.951549
Target:  5'- aGUAAUCGUcgagcugCGCGGCgacgcccgaUGCGAugGGCg -3'
miRNA:   3'- -CGUUAGCGaa-----GUGCCG---------ACGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 14103 0.66 0.951549
Target:  5'- gGCGAaCGUaUCGCgcugcuguccaaGGCcGCGAAGAACa -3'
miRNA:   3'- -CGUUaGCGaAGUG------------CCGaCGCUUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 28004 0.66 0.946583
Target:  5'- cGCuGUCGUUUCACuacuGGUauUGCGAuccgGAAGCc -3'
miRNA:   3'- -CGuUAGCGAAGUG----CCG--ACGCU----UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 8152 0.66 0.946583
Target:  5'- gGCcGUCGCgUCGCGGCcgGuCGGGAu-- -3'
miRNA:   3'- -CGuUAGCGaAGUGCCGa-C-GCUUUuug -5'
27685 3' -47.5 NC_005882.1 + 19664 0.66 0.940745
Target:  5'- uGCAGUCGUcgcauuucucgacUUCACGGCacGUGAGc--- -3'
miRNA:   3'- -CGUUAGCG-------------AAGUGCCGa-CGCUUuuug -5'
27685 3' -47.5 NC_005882.1 + 26829 0.67 0.937961
Target:  5'- cGCGagcGUCGCgaccuucaugccgaUCACGGCcguUGCGAAGccGACc -3'
miRNA:   3'- -CGU---UAGCGa-------------AGUGCCG---ACGCUUU--UUG- -5'
27685 3' -47.5 NC_005882.1 + 967 0.67 0.936251
Target:  5'- aGCAAUCGaagaugaUUCGCGGCaucuggcuugagcugGCGGAucgGGGCg -3'
miRNA:   3'- -CGUUAGCg------AAGUGCCGa--------------CGCUU---UUUG- -5'
27685 3' -47.5 NC_005882.1 + 10829 0.67 0.929725
Target:  5'- gGCGGUCGCgcUCGucGCUGCGggGcucguGACg -3'
miRNA:   3'- -CGUUAGCGa-AGUgcCGACGCuuU-----UUG- -5'
27685 3' -47.5 NC_005882.1 + 31128 0.67 0.929725
Target:  5'- cGCgGAUCGUUUCACGcGaCUcaGCGAucGACg -3'
miRNA:   3'- -CG-UUAGCGAAGUGC-C-GA--CGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 32069 0.67 0.929725
Target:  5'- uCGAUCGCguagUCGacCGGCgucgGCGAucGGACg -3'
miRNA:   3'- cGUUAGCGa---AGU--GCCGa---CGCUu-UUUG- -5'
27685 3' -47.5 NC_005882.1 + 295 0.67 0.923445
Target:  5'- gGCAuuacAUCG----ACGGCUGCGGAGAAg -3'
miRNA:   3'- -CGU----UAGCgaagUGCCGACGCUUUUUg -5'
27685 3' -47.5 NC_005882.1 + 14513 0.67 0.916834
Target:  5'- uGCcg-CGCUggcUGGCUGCGAGcAACg -3'
miRNA:   3'- -CGuuaGCGAaguGCCGACGCUUuUUG- -5'
27685 3' -47.5 NC_005882.1 + 2190 0.67 0.916834
Target:  5'- gGCGAUCGUcaCGCaGGCguuUGCGAccGACa -3'
miRNA:   3'- -CGUUAGCGaaGUG-CCG---ACGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 14122 0.67 0.916834
Target:  5'- uCGGUCGCUUCcuGCaGGUUGaCGAugGACu -3'
miRNA:   3'- cGUUAGCGAAG--UG-CCGAC-GCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 25228 0.68 0.912708
Target:  5'- gGCAAUCGCgaUCACGGuguagguaaugccuuCgGCGAugGACu -3'
miRNA:   3'- -CGUUAGCGa-AGUGCC---------------GaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 18526 0.68 0.909892
Target:  5'- cGUggUUGCccgUUACGGCUgaugGCGAGcuGCa -3'
miRNA:   3'- -CGuuAGCGa--AGUGCCGA----CGCUUuuUG- -5'
27685 3' -47.5 NC_005882.1 + 20496 0.68 0.909892
Target:  5'- -gGAUCGCUgC-CGGCcGCGguGAACu -3'
miRNA:   3'- cgUUAGCGAaGuGCCGaCGCuuUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.