miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 33109 0.67 0.522333
Target:  5'- gCGuACUGCgaaugcggGUCGGGCGCgGCGauaUGCUGCg -3'
miRNA:   3'- -GC-UGAUG--------CGGCUUGUG-CGCg--ACGACG- -5'
27687 3' -55.4 NC_005882.1 + 33049 0.69 0.439013
Target:  5'- uCGAcCUGCGCCuucagguAGCGCGUGCggccgccgaGCUGCu -3'
miRNA:   3'- -GCU-GAUGCGGc------UUGUGCGCGa--------CGACG- -5'
27687 3' -55.4 NC_005882.1 + 32729 0.66 0.566254
Target:  5'- gCGGCguUGCUGcGCACGaCGUUgGCUGCg -3'
miRNA:   3'- -GCUGauGCGGCuUGUGC-GCGA-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 31862 0.69 0.400289
Target:  5'- cCGAUUACGCCGAcgucgacgaucgACugGUGCgcGCUcuugGCg -3'
miRNA:   3'- -GCUGAUGCGGCU------------UGugCGCGa-CGA----CG- -5'
27687 3' -55.4 NC_005882.1 + 31541 0.8 0.085138
Target:  5'- aGACaGCGCCGucgcucgucucGACACGCGUgccgGCUGCa -3'
miRNA:   3'- gCUGaUGCGGC-----------UUGUGCGCGa---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 31290 0.74 0.200161
Target:  5'- uCGAcCUGCGCCGGAUACaGCGUcuUGCcagUGCg -3'
miRNA:   3'- -GCU-GAUGCGGCUUGUG-CGCG--ACG---ACG- -5'
27687 3' -55.4 NC_005882.1 + 31009 0.68 0.468387
Target:  5'- uCGACgcgaucCGCCGGugGgagcCGCGCUGCgaggucgUGCg -3'
miRNA:   3'- -GCUGau----GCGGCUugU----GCGCGACG-------ACG- -5'
27687 3' -55.4 NC_005882.1 + 29780 0.67 0.55517
Target:  5'- aGGCaACGCUGcagacgaaGGCACGCGCgGC-GCu -3'
miRNA:   3'- gCUGaUGCGGC--------UUGUGCGCGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 29171 0.83 0.049937
Target:  5'- uCGGCUACGCCG-GCGCGcCGUUGCUcGCg -3'
miRNA:   3'- -GCUGAUGCGGCuUGUGC-GCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 28736 0.77 0.135293
Target:  5'- aGACUcgGCGCCgcgGAACuuaGCGCGCUGCUcGCc -3'
miRNA:   3'- gCUGA--UGCGG---CUUG---UGCGCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 28432 0.68 0.500863
Target:  5'- uGACcGCGUCGAcggcCACGCGCaucgcgGaCUGCg -3'
miRNA:   3'- gCUGaUGCGGCUu---GUGCGCGa-----C-GACG- -5'
27687 3' -55.4 NC_005882.1 + 28028 0.74 0.194745
Target:  5'- gCGAUccggaaGCCGAGCugGCGaaGCUGCg -3'
miRNA:   3'- -GCUGaug---CGGCUUGugCGCgaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 27924 1.03 0.001807
Target:  5'- cCGACUACGCCGAACACGCGC-GCUGCa -3'
miRNA:   3'- -GCUGAUGCGGCUUGUGCGCGaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 27568 0.69 0.42913
Target:  5'- uCGGCgguCGCCGcGCGCGCgGCcGCcgGCa -3'
miRNA:   3'- -GCUGau-GCGGCuUGUGCG-CGaCGa-CG- -5'
27687 3' -55.4 NC_005882.1 + 27155 0.72 0.298015
Target:  5'- -uGCUG-GCCGGGCGCGCGgUGCUcugGCu -3'
miRNA:   3'- gcUGAUgCGGCUUGUGCGCgACGA---CG- -5'
27687 3' -55.4 NC_005882.1 + 27087 0.66 0.577395
Target:  5'- gCGGCUGCucGCCcaGGGCGgGaUGCUGCUGg -3'
miRNA:   3'- -GCUGAUG--CGG--CUUGUgC-GCGACGACg -5'
27687 3' -55.4 NC_005882.1 + 27014 0.67 0.544149
Target:  5'- gCGGCgcgcuCGUCGuuggcCGCGCGCUGCUc- -3'
miRNA:   3'- -GCUGau---GCGGCuu---GUGCGCGACGAcg -5'
27687 3' -55.4 NC_005882.1 + 26819 0.66 0.622341
Target:  5'- gCGACcuucAUGCCGAuCACG-GCcGUUGCg -3'
miRNA:   3'- -GCUGa---UGCGGCUuGUGCgCGaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 26628 0.74 0.223145
Target:  5'- gGAUcACgGuuGGcCGCGCGCUGCUGCc -3'
miRNA:   3'- gCUGaUG-CggCUuGUGCGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 26557 0.69 0.41938
Target:  5'- gGACUACGUgCGc-CGCGCGgaGCUGg -3'
miRNA:   3'- gCUGAUGCG-GCuuGUGCGCgaCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.