miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 21163 0.83 0.049937
Target:  5'- uCGGCaACGCCGAGCGCcuucGCGCcgGCUGCg -3'
miRNA:   3'- -GCUGaUGCGGCUUGUG----CGCGa-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 10962 0.69 0.42913
Target:  5'- gCGAaauccgcaUGCGCCc-GCGCGCGCUGCg-- -3'
miRNA:   3'- -GCUg-------AUGCGGcuUGUGCGCGACGacg -5'
27687 3' -55.4 NC_005882.1 + 17782 0.69 0.439013
Target:  5'- cCGAUg--GCuCGGGCGCGUGCgGCUGUc -3'
miRNA:   3'- -GCUGaugCG-GCUUGUGCGCGaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 20803 0.66 0.622341
Target:  5'- aCGGCgUACGCUG--UugGcCGCcgGCUGCa -3'
miRNA:   3'- -GCUG-AUGCGGCuuGugC-GCGa-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 12778 0.75 0.184299
Target:  5'- cCGGCgaGCGCCGc-CGCGCGCUGCgucuccGCg -3'
miRNA:   3'- -GCUGa-UGCGGCuuGUGCGCGACGa-----CG- -5'
27687 3' -55.4 NC_005882.1 + 31290 0.74 0.200161
Target:  5'- uCGAcCUGCGCCGGAUACaGCGUcuUGCcagUGCg -3'
miRNA:   3'- -GCU-GAUGCGGCUUGUG-CGCG--ACG---ACG- -5'
27687 3' -55.4 NC_005882.1 + 22461 0.71 0.313557
Target:  5'- gGGCUugGUCG-ACG-GCGCUGCgGCc -3'
miRNA:   3'- gCUGAugCGGCuUGUgCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 11671 0.71 0.329706
Target:  5'- -uGCUGCGgCGAGaaaaGCGCGaugGCUGCa -3'
miRNA:   3'- gcUGAUGCgGCUUg---UGCGCga-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 20936 0.7 0.345607
Target:  5'- cCGGCguccGCGCCGAGCAgGUacgGCcggaaaauguccgUGCUGCg -3'
miRNA:   3'- -GCUGa---UGCGGCUUGUgCG---CG-------------ACGACG- -5'
27687 3' -55.4 NC_005882.1 + 6469 0.69 0.42913
Target:  5'- uGGCUGuCGCCcaggcAGCGCGCGCgGCcgGCc -3'
miRNA:   3'- gCUGAU-GCGGc----UUGUGCGCGaCGa-CG- -5'
27687 3' -55.4 NC_005882.1 + 5137 0.7 0.363813
Target:  5'- gCGGC-ACGCCGAuACGCcaGCGCaGCaUGCg -3'
miRNA:   3'- -GCUGaUGCGGCU-UGUG--CGCGaCG-ACG- -5'
27687 3' -55.4 NC_005882.1 + 2125 0.71 0.338007
Target:  5'- -cGCUGCGCCGAuuggACAucaccgaucCGCGCUGgCUGg -3'
miRNA:   3'- gcUGAUGCGGCU----UGU---------GCGCGAC-GACg -5'
27687 3' -55.4 NC_005882.1 + 31541 0.8 0.085138
Target:  5'- aGACaGCGCCGucgcucgucucGACACGCGUgccgGCUGCa -3'
miRNA:   3'- gCUGaUGCGGC-----------UUGUGCGCGa---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 31862 0.69 0.400289
Target:  5'- cCGAUUACGCCGAcgucgacgaucgACugGUGCgcGCUcuugGCg -3'
miRNA:   3'- -GCUGAUGCGGCU------------UGugCGCGa-CGA----CG- -5'
27687 3' -55.4 NC_005882.1 + 18830 0.77 0.127781
Target:  5'- aCGAUUGCGCCGGcgugAUACGCGCga-UGCa -3'
miRNA:   3'- -GCUGAUGCGGCU----UGUGCGCGacgACG- -5'
27687 3' -55.4 NC_005882.1 + 7610 0.71 0.329706
Target:  5'- gGAgUGCGCCGAGCACGaaGUcGCaGCa -3'
miRNA:   3'- gCUgAUGCGGCUUGUGCg-CGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 18529 0.69 0.41938
Target:  5'- cCGGCUugccCGCCGAACugGUGaaucGCgGCg -3'
miRNA:   3'- -GCUGAu---GCGGCUUGugCGCga--CGaCG- -5'
27687 3' -55.4 NC_005882.1 + 33049 0.69 0.439013
Target:  5'- uCGAcCUGCGCCuucagguAGCGCGUGCggccgccgaGCUGCu -3'
miRNA:   3'- -GCU-GAUGCGGc------UUGUGCGCGa--------CGACG- -5'
27687 3' -55.4 NC_005882.1 + 28736 0.77 0.135293
Target:  5'- aGACUcgGCGCCgcgGAACuuaGCGCGCUGCUcGCc -3'
miRNA:   3'- gCUGA--UGCGG---CUUG---UGCGCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 13833 0.74 0.205706
Target:  5'- uCGGCagGCGuuGcACGC-CGCUGCUGCg -3'
miRNA:   3'- -GCUGa-UGCggCuUGUGcGCGACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.