miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 35070 0.71 0.648872
Target:  5'- aUCGGCCGGC--ACGAAUgGGCA-GUCg -3'
miRNA:   3'- -AGCUGGUCGuuUGUUUGgCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 34056 0.68 0.784753
Target:  5'- cCGuACUGGCuAAACAAcucACCGGcCACGUCc -3'
miRNA:   3'- aGC-UGGUCG-UUUGUU---UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 33681 0.71 0.601871
Target:  5'- uUCGugCAGCGAGCAGucgguaauuACCGAUcCGcCa -3'
miRNA:   3'- -AGCugGUCGUUUGUU---------UGGCUGuGCaG- -5'
27688 5' -49.8 NC_005882.1 + 33151 0.69 0.71515
Target:  5'- cCGACCAGUucGGCAAGCCuugccgcgagguccGACuuCGUCg -3'
miRNA:   3'- aGCUGGUCGu-UUGUUUGG--------------CUGu-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 33083 0.67 0.862424
Target:  5'- -gGACCucgcGGCAAgGCuuGCCGaACugGUCg -3'
miRNA:   3'- agCUGG----UCGUU-UGuuUGGC-UGugCAG- -5'
27688 5' -49.8 NC_005882.1 + 32825 0.66 0.89428
Target:  5'- -aGACUcGCGAGuacgcauCGAGCCGGCGCGa- -3'
miRNA:   3'- agCUGGuCGUUU-------GUUUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 32440 0.7 0.695587
Target:  5'- aUCGAUCAgGUAGACcagGAGCggCGACAUGUCg -3'
miRNA:   3'- -AGCUGGU-CGUUUG---UUUG--GCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 32347 0.73 0.521127
Target:  5'- gUUGGCCgAGCGccucGACAAcAUCGACAUGUCg -3'
miRNA:   3'- -AGCUGG-UCGU----UUGUU-UGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 32058 0.71 0.637118
Target:  5'- gUCGACCGGCGucGGCG-AUCGG-ACGUCg -3'
miRNA:   3'- -AGCUGGUCGU--UUGUuUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31961 0.69 0.741175
Target:  5'- cCGACgAGCGucGGCGgccgcuGACCGAuUACGUCg -3'
miRNA:   3'- aGCUGgUCGU--UUGU------UUGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31947 0.69 0.741175
Target:  5'- gUCGACgAGCGggUAGACCugGACGCu-- -3'
miRNA:   3'- -AGCUGgUCGUuuGUUUGG--CUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 31582 0.7 0.660609
Target:  5'- cUGGCCGGC-GACGAG-CGuCACGUCg -3'
miRNA:   3'- aGCUGGUCGuUUGUUUgGCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31113 0.66 0.895038
Target:  5'- gCGACuCAGCGaucGACGGAauGACACG-Ca -3'
miRNA:   3'- aGCUG-GUCGU---UUGUUUggCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 30476 0.72 0.566887
Target:  5'- aCGugCucgGGCAuGCAGACCGugAuCGUCg -3'
miRNA:   3'- aGCugG---UCGUuUGUUUGGCugU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 29812 0.66 0.887323
Target:  5'- cUUGACCGGacgaaccuCAAGCAGACUGGCGgcucgGUCg -3'
miRNA:   3'- -AGCUGGUC--------GUUUGUUUGGCUGUg----CAG- -5'
27688 5' -49.8 NC_005882.1 + 29536 0.67 0.853565
Target:  5'- gCGGuCCAGCAguucaAGCGcGCCGACuugaaGUCg -3'
miRNA:   3'- aGCU-GGUCGU-----UUGUuUGGCUGug---CAG- -5'
27688 5' -49.8 NC_005882.1 + 29244 0.7 0.665297
Target:  5'- gCGGCCGcacGCGAGCAAcggcgcgccggcguaGCCGAUcuucaGCGUCa -3'
miRNA:   3'- aGCUGGU---CGUUUGUU---------------UGGCUG-----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 28487 0.67 0.844441
Target:  5'- cUCGACgAGCGAcucaaugcuGCGAACgGAU-CGUCu -3'
miRNA:   3'- -AGCUGgUCGUU---------UGUUUGgCUGuGCAG- -5'
27688 5' -49.8 NC_005882.1 + 28143 1.12 0.001444
Target:  5'- gUCGACCAGCAAACAAACCGACACGUCg -3'
miRNA:   3'- -AGCUGGUCGUUUGUUUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 27200 0.74 0.434567
Target:  5'- cCGGCCAGCAu-CAGGCCGuuCACGa- -3'
miRNA:   3'- aGCUGGUCGUuuGUUUGGCu-GUGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.