miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27689 5' -67.1 NC_005882.1 + 36666 0.66 0.155166
Target:  5'- aGCUGuuGcCGGCa--GUAGGCGGUCg -3'
miRNA:   3'- -CGGCggCcGCCGgcgCGUCCGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 33796 0.66 0.159274
Target:  5'- cGCUGCCGGauGCCacaacCGUuccAGGCGGcUCUg -3'
miRNA:   3'- -CGGCGGCCgcCGGc----GCG---UCCGCC-AGA- -5'
27689 5' -67.1 NC_005882.1 + 32971 0.66 0.155166
Target:  5'- aGCaGCuCGGCGGCCGCacGCgcuaccugaAGGCgcaGGUCg -3'
miRNA:   3'- -CGgCG-GCCGCCGGCG--CG---------UCCG---CCAGa -5'
27689 5' -67.1 NC_005882.1 + 32274 0.72 0.052508
Target:  5'- uUCGCUGGCGGUcagcaCGCGCAGuGCGaGUCc -3'
miRNA:   3'- cGGCGGCCGCCG-----GCGCGUC-CGC-CAGa -5'
27689 5' -67.1 NC_005882.1 + 31018 0.69 0.086144
Target:  5'- uCCGCCGGUGggaGCCGCGCuGcGaGGUCg -3'
miRNA:   3'- cGGCGGCCGC---CGGCGCGuC-CgCCAGa -5'
27689 5' -67.1 NC_005882.1 + 29177 0.66 0.155166
Target:  5'- -aCGCCGGCGcGCCGUugcucGCGuGCGGcCg -3'
miRNA:   3'- cgGCGGCCGC-CGGCG-----CGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 28314 0.71 0.065323
Target:  5'- gGCCGCCGGCGGCaccuugggcuguaCG-GCcGGCGG-CUu -3'
miRNA:   3'- -CGGCGGCCGCCG-------------GCgCGuCCGCCaGA- -5'
27689 5' -67.1 NC_005882.1 + 28265 1.07 0.000063
Target:  5'- uGCCGCCGGCGGCCGCGCAGGCGGUCUc -3'
miRNA:   3'- -CGGCGGCCGCCGGCGCGUCCGCCAGA- -5'
27689 5' -67.1 NC_005882.1 + 28038 0.72 0.049673
Target:  5'- aGCCgaGCUGGCGaaGCUGCGCGcGGCGGUg- -3'
miRNA:   3'- -CGG--CGGCCGC--CGGCGCGU-CCGCCAga -5'
27689 5' -67.1 NC_005882.1 + 27639 0.81 0.008919
Target:  5'- cGCCauGCCGGCGGCCGCGCGcGCGG-Cg -3'
miRNA:   3'- -CGG--CGGCCGCCGGCGCGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 27562 0.71 0.063723
Target:  5'- cGCuCGUCGGCGgucGCCGCGCGcGCGGcCg -3'
miRNA:   3'- -CG-GCGGCCGC---CGGCGCGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 27110 0.67 0.12901
Target:  5'- uGCUGCUGGC--CCGCGUccuGGGCGGcCa -3'
miRNA:   3'- -CGGCGGCCGccGGCGCG---UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 26952 0.66 0.163479
Target:  5'- cGCgGCCGGCaaguucgcGGCCGUGauCGGGCGuGcCg -3'
miRNA:   3'- -CGgCGGCCG--------CCGGCGC--GUCCGC-CaGa -5'
27689 5' -67.1 NC_005882.1 + 26768 0.67 0.12901
Target:  5'- gGCCGggaUgGGCGGCCGCGaacuGcGCGGUg- -3'
miRNA:   3'- -CGGC---GgCCGCCGGCGCgu--C-CGCCAga -5'
27689 5' -67.1 NC_005882.1 + 26716 0.66 0.163479
Target:  5'- gGCCGCCcauccCGGCCugaucCGCGGcGUGGUCg -3'
miRNA:   3'- -CGGCGGcc---GCCGGc----GCGUC-CGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 26060 0.7 0.071136
Target:  5'- uGCCGCCGuaGGCCGCGCGGuuGa--- -3'
miRNA:   3'- -CGGCGGCcgCCGGCGCGUCcgCcaga -5'
27689 5' -67.1 NC_005882.1 + 23615 0.68 0.101366
Target:  5'- uGCCGCCGuGCGGUUgccccacagGCGCAGGCc---- -3'
miRNA:   3'- -CGGCGGC-CGCCGG---------CGCGUCCGccaga -5'
27689 5' -67.1 NC_005882.1 + 22535 0.66 0.158031
Target:  5'- aUCGCucagacucccuucaCGGCGaCCGCGUucgcGGCGGUCUu -3'
miRNA:   3'- cGGCG--------------GCCGCcGGCGCGu---CCGCCAGA- -5'
27689 5' -67.1 NC_005882.1 + 22478 0.69 0.088521
Target:  5'- gGCaCGCUGG-GG-CGCGCGGGCuuGGUCg -3'
miRNA:   3'- -CG-GCGGCCgCCgGCGCGUCCG--CCAGa -5'
27689 5' -67.1 NC_005882.1 + 21559 0.66 0.151155
Target:  5'- gGuuGUa-GCGGCCGCGCAaGuGCGcGUCg -3'
miRNA:   3'- -CggCGgcCGCCGGCGCGU-C-CGC-CAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.