miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27692 5' -47.8 NC_005882.1 + 3260 0.66 0.95687
Target:  5'- -cGCGAGCGuGcGGGcgGCGUCAcuguCCAGCGg -3'
miRNA:   3'- caUGCUCGU-CuUCU--UGUAGU----GGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 33688 0.66 0.95687
Target:  5'- -aGCGAGCAGucGGuaAUUACCGAUc -3'
miRNA:   3'- caUGCUCGUCuuCUugUAGUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 15036 0.66 0.95687
Target:  5'- cUGCGuGCcGAAGAACAgCGgCGGCGc -3'
miRNA:   3'- cAUGCuCGuCUUCUUGUaGUgGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 19806 0.66 0.95687
Target:  5'- -aGCucGCcGAGGAACGaacggaaucgcUCGCCAGCGg -3'
miRNA:   3'- caUGcuCGuCUUCUUGU-----------AGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 5454 0.66 0.956427
Target:  5'- uGUGCGuuucaguGGCGuuGAAGuGCAUaCGCCAGCGu -3'
miRNA:   3'- -CAUGC-------UCGU--CUUCuUGUA-GUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 12691 0.66 0.952299
Target:  5'- cGUuCGAGCuuGgcGAccuucGCGUCGCCGGCa -3'
miRNA:   3'- -CAuGCUCGu-CuuCU-----UGUAGUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 3698 0.66 0.952299
Target:  5'- -cGCGGGCcGucGAGCGggGCCAGCu -3'
miRNA:   3'- caUGCUCGuCuuCUUGUagUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 25391 0.66 0.952299
Target:  5'- -cACGAcGCuGAAuGGccucggccGCGUCGCCGACGa -3'
miRNA:   3'- caUGCU-CGuCUU-CU--------UGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 9320 0.66 0.942209
Target:  5'- aGUACGAGaaAGgcGAGCGuUCGCCGgACGc -3'
miRNA:   3'- -CAUGCUCg-UCuuCUUGU-AGUGGU-UGC- -5'
27692 5' -47.8 NC_005882.1 + 13916 0.66 0.942209
Target:  5'- gGUACGGGCAGcguaucGAGCGccgcuUCGCC-GCGa -3'
miRNA:   3'- -CAUGCUCGUCuu----CUUGU-----AGUGGuUGC- -5'
27692 5' -47.8 NC_005882.1 + 22125 0.66 0.942209
Target:  5'- -gGCGGGCGGAAGcc---CACCAggGCGg -3'
miRNA:   3'- caUGCUCGUCUUCuuguaGUGGU--UGC- -5'
27692 5' -47.8 NC_005882.1 + 10788 0.67 0.930826
Target:  5'- -gGCGAuC-GAAGAACGcgCGCCGGCGg -3'
miRNA:   3'- caUGCUcGuCUUCUUGUa-GUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 34654 0.67 0.924645
Target:  5'- -cGCGGGCGGGAuGGAUAcugguacugCACCGGCa -3'
miRNA:   3'- caUGCUCGUCUU-CUUGUa--------GUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 21471 0.67 0.924645
Target:  5'- gGUGCGccaGGCGGAGGAA-AUCGUCGACGc -3'
miRNA:   3'- -CAUGC---UCGUCUUCUUgUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 5639 0.67 0.924645
Target:  5'- -aGCGAGCGGcacAGGuugcGCGUCAUgGACGc -3'
miRNA:   3'- caUGCUCGUCu--UCU----UGUAGUGgUUGC- -5'
27692 5' -47.8 NC_005882.1 + 15280 0.67 0.918136
Target:  5'- uGUACGAGCGGGcgucgaccgGGAGCgccGUgAgCAGCGg -3'
miRNA:   3'- -CAUGCUCGUCU---------UCUUG---UAgUgGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 11183 0.67 0.918136
Target:  5'- ---aGAGCuGGGAGAACAUCcgcugccagaaGCCGACc -3'
miRNA:   3'- caugCUCG-UCUUCUUGUAG-----------UGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 11313 0.67 0.918136
Target:  5'- -gGCGAcCAGGAGAACu---CCGACGa -3'
miRNA:   3'- caUGCUcGUCUUCUUGuaguGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 28292 0.67 0.9113
Target:  5'- uGUACGgccGGCGGcuuGAACGgguuuuucuugUCGCCGACGa -3'
miRNA:   3'- -CAUGC---UCGUCuu-CUUGU-----------AGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 6037 0.68 0.89666
Target:  5'- gGUGCGAGCAGuuggucGGGAugGaCGCCAuacauGCGu -3'
miRNA:   3'- -CAUGCUCGUC------UUCUugUaGUGGU-----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.