Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27695 | 3' | -53.9 | NC_005882.1 | + | 29962 | 1.12 | 0.000562 |
Target: 5'- gCGGCGGCUACCAAACCGAAGUCGAGCu -3' miRNA: 3'- -GCCGCCGAUGGUUUGGCUUCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 10269 | 0.77 | 0.160345 |
Target: 5'- uCGGCGGCUGCCAguAugCGGggaaaacguacgcGGUCG-GCa -3' miRNA: 3'- -GCCGCCGAUGGU--UugGCU-------------UCAGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 17351 | 0.77 | 0.160799 |
Target: 5'- uCGGCGGCaGCUucaugcaguAGCCGAGGUCGAccGCu -3' miRNA: 3'- -GCCGCCGaUGGu--------UUGGCUUCAGCU--CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 21187 | 0.76 | 0.206621 |
Target: 5'- uGGcCGGCgcACCGGucgacgagcauGCCGAGGUCGAGUc -3' miRNA: 3'- gCC-GCCGa-UGGUU-----------UGGCUUCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 5399 | 0.76 | 0.184999 |
Target: 5'- uGGCGGUUGCCucGCCGGaaAGUCGGa- -3' miRNA: 3'- gCCGCCGAUGGuuUGGCU--UCAGCUcg -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 25734 | 0.76 | 0.212358 |
Target: 5'- uGGCGGcCUGCCGAacagcGCCGAuuaCGGGCg -3' miRNA: 3'- gCCGCC-GAUGGUU-----UGGCUucaGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 32977 | 0.74 | 0.256435 |
Target: 5'- uCGGCGGCcgcacgcgcUACCugAAGgCGcAGGUCGAGCa -3' miRNA: 3'- -GCCGCCG---------AUGG--UUUgGC-UUCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 10769 | 0.73 | 0.299946 |
Target: 5'- cCGGCGGUUGugAuACCGGA-UCGAGCg -3' miRNA: 3'- -GCCGCCGAUggUuUGGCUUcAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 25647 | 0.73 | 0.323757 |
Target: 5'- aCGGCGGCUGCCAcGGCCGcgcccguaaUCG-GCg -3' miRNA: 3'- -GCCGCCGAUGGU-UUGGCuuc------AGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 26016 | 0.73 | 0.315666 |
Target: 5'- aCGGCGGCaaGCUcgGCCGGu-UCGAGCu -3' miRNA: 3'- -GCCGCCGa-UGGuuUGGCUucAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 19762 | 0.73 | 0.315666 |
Target: 5'- uCGGCGaGCUGCCGAAggucgUCGAAuuuggCGAGCa -3' miRNA: 3'- -GCCGC-CGAUGGUUU-----GGCUUca---GCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 12598 | 0.73 | 0.299946 |
Target: 5'- uCGGCGGCUAUCAcGCCGGugcgcuugccGG-CGAcGCg -3' miRNA: 3'- -GCCGCCGAUGGUuUGGCU----------UCaGCU-CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 31022 | 0.73 | 0.292315 |
Target: 5'- cCGGUGGgaGCCGcGCugCGAGGUCGuGCg -3' miRNA: 3'- -GCCGCCgaUGGUuUG--GCUUCAGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 12341 | 0.73 | 0.292315 |
Target: 5'- cCGGCGGC-GCCGAucggcaacGCUGGuucggccauGUCGAGCg -3' miRNA: 3'- -GCCGCCGaUGGUU--------UGGCUu--------CAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 24127 | 0.72 | 0.366504 |
Target: 5'- cCGGCaGCUcgACCuuGCCGAucauGcCGAGCg -3' miRNA: 3'- -GCCGcCGA--UGGuuUGGCUu---CaGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 7617 | 0.72 | 0.366504 |
Target: 5'- cCGGCcuGGagugcGCCGAGCaCGAAGUCGcAGCa -3' miRNA: 3'- -GCCG--CCga---UGGUUUG-GCUUCAGC-UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 18089 | 0.72 | 0.366504 |
Target: 5'- aGGUcaGGCUGCCAcgccgcggcACCGggGUUGuAGCu -3' miRNA: 3'- gCCG--CCGAUGGUu--------UGGCuuCAGC-UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 25134 | 0.71 | 0.381897 |
Target: 5'- gCGGCGGCgaucaagGCCAucguguggcuuugcGGCCGGc-UCGGGCg -3' miRNA: 3'- -GCCGCCGa------UGGU--------------UUGGCUucAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 18548 | 0.71 | 0.403398 |
Target: 5'- uGGCGaGCUGCa--ACCuGAagcGGUCGAGCc -3' miRNA: 3'- gCCGC-CGAUGguuUGG-CU---UCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 27726 | 0.7 | 0.442557 |
Target: 5'- gGGCGGCUcACCGGACgGcgucaaggaucAGGUCaAGCa -3' miRNA: 3'- gCCGCCGA-UGGUUUGgC-----------UUCAGcUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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