miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 36443 0.67 0.627582
Target:  5'- aGGCuaucucauGGCUuacaacGCCAGACUGcgagauucGGUCGAGCc -3'
miRNA:   3'- gCCG--------CCGA------UGGUUUGGCu-------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 35389 0.66 0.672926
Target:  5'- uGGCaGGcCUACCgGAGCCGAucgaaGGGCa -3'
miRNA:   3'- gCCG-CC-GAUGG-UUUGGCUucag-CUCG- -5'
27695 3' -53.9 NC_005882.1 + 34527 0.66 0.717609
Target:  5'- aCGGCccGCUGCaCAAacGCCGucGUugCGAGCu -3'
miRNA:   3'- -GCCGc-CGAUG-GUU--UGGCuuCA--GCUCG- -5'
27695 3' -53.9 NC_005882.1 + 33090 0.67 0.65029
Target:  5'- gCGGCaaGGCuUGCCGAACU--GGUCG-GCc -3'
miRNA:   3'- -GCCG--CCG-AUGGUUUGGcuUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 32977 0.74 0.256435
Target:  5'- uCGGCGGCcgcacgcgcUACCugAAGgCGcAGGUCGAGCa -3'
miRNA:   3'- -GCCGCCG---------AUGG--UUUgGC-UUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 32569 0.68 0.559885
Target:  5'- uCGGCGcCUagGCUuuGgCGAAGUUGAGCu -3'
miRNA:   3'- -GCCGCcGA--UGGuuUgGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 31971 0.68 0.571066
Target:  5'- uCGGCGGCcGCU-GACCGAuuacGUCGAcGUc -3'
miRNA:   3'- -GCCGCCGaUGGuUUGGCUu---CAGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 31646 0.66 0.695398
Target:  5'- --cCGGCUGCCAGccguucCCGA--UCGAGCc -3'
miRNA:   3'- gccGCCGAUGGUUu-----GGCUucAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 31389 0.67 0.65029
Target:  5'- -cGCGGCUGCCGgcgcAGCCcgcGAAGaCGAcGCu -3'
miRNA:   3'- gcCGCCGAUGGU----UUGG---CUUCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 31022 0.73 0.292315
Target:  5'- cCGGUGGgaGCCGcGCugCGAGGUCGuGCg -3'
miRNA:   3'- -GCCGCCgaUGGUuUG--GCUUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 30873 0.7 0.432565
Target:  5'- gGGcCGGCUGCCAgugAACgGAGGUgaugucggaGAGCu -3'
miRNA:   3'- gCC-GCCGAUGGU---UUGgCUUCAg--------CUCG- -5'
27695 3' -53.9 NC_005882.1 + 30613 0.69 0.515857
Target:  5'- gGGCGGCaugGCCGGAUCGGgcGG-CGAugGCg -3'
miRNA:   3'- gCCGCCGa--UGGUUUGGCU--UCaGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 29962 1.12 0.000562
Target:  5'- gCGGCGGCUACCAAACCGAAGUCGAGCu -3'
miRNA:   3'- -GCCGCCGAUGGUUUGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 29615 0.66 0.716506
Target:  5'- aGGuCGGCUACCAcaacCCGAAaacgaagaagcucGUCGucuacGGCg -3'
miRNA:   3'- gCC-GCCGAUGGUuu--GGCUU-------------CAGC-----UCG- -5'
27695 3' -53.9 NC_005882.1 + 29047 0.66 0.714298
Target:  5'- uCGGUGGCguaUACCGAcuucuugucagGCCaguccgacgagaucGAGGUCGuGCu -3'
miRNA:   3'- -GCCGCCG---AUGGUU-----------UGG--------------CUUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 27726 0.7 0.442557
Target:  5'- gGGCGGCUcACCGGACgGcgucaaggaucAGGUCaAGCa -3'
miRNA:   3'- gCCGCCGA-UGGUUUGgC-----------UUCAGcUCG- -5'
27695 3' -53.9 NC_005882.1 + 27632 0.69 0.537716
Target:  5'- cCGGCGGCcGCgCGcgcggcGACCGccGaCGAGCg -3'
miRNA:   3'- -GCCGCCGaUG-GU------UUGGCuuCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 26951 0.66 0.672926
Target:  5'- aGGCGGgaGCCGccACCGGcccaGAGCg -3'
miRNA:   3'- gCCGCCgaUGGUu-UGGCUucagCUCG- -5'
27695 3' -53.9 NC_005882.1 + 26286 0.69 0.537716
Target:  5'- cCGGCGGCUAUuCGAGCuaCGAAGgcUCGcuGCa -3'
miRNA:   3'- -GCCGCCGAUG-GUUUG--GCUUC--AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 26016 0.73 0.315666
Target:  5'- aCGGCGGCaaGCUcgGCCGGu-UCGAGCu -3'
miRNA:   3'- -GCCGCCGa-UGGuuUGGCUucAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.