miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 17351 0.77 0.160799
Target:  5'- uCGGCGGCaGCUucaugcaguAGCCGAGGUCGAccGCu -3'
miRNA:   3'- -GCCGCCGaUGGu--------UUGGCUUCAGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 20358 0.67 0.615095
Target:  5'- aCGGCGGCUuguuCCAGggggaacGCCGAuuccuGGUCuucGCg -3'
miRNA:   3'- -GCCGCCGAu---GGUU-------UGGCU-----UCAGcu-CG- -5'
27695 3' -53.9 NC_005882.1 + 36443 0.67 0.627582
Target:  5'- aGGCuaucucauGGCUuacaacGCCAGACUGcgagauucGGUCGAGCc -3'
miRNA:   3'- gCCG--------CCGA------UGGUUUGGCu-------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 34527 0.66 0.717609
Target:  5'- aCGGCccGCUGCaCAAacGCCGucGUugCGAGCu -3'
miRNA:   3'- -GCCGc-CGAUG-GUU--UGGCuuCA--GCUCG- -5'
27695 3' -53.9 NC_005882.1 + 18089 0.72 0.366504
Target:  5'- aGGUcaGGCUGCCAcgccgcggcACCGggGUUGuAGCu -3'
miRNA:   3'- gCCG--CCGAUGGUu--------UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 7617 0.72 0.366504
Target:  5'- cCGGCcuGGagugcGCCGAGCaCGAAGUCGcAGCa -3'
miRNA:   3'- -GCCG--CCga---UGGUUUG-GCUUCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 25134 0.71 0.381897
Target:  5'- gCGGCGGCgaucaagGCCAucguguggcuuugcGGCCGGc-UCGGGCg -3'
miRNA:   3'- -GCCGCCGa------UGGU--------------UUGGCUucAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 2467 0.7 0.431573
Target:  5'- uGGCGGaCgaaGCCAAAaCGAgaucgaaggggcuGGUCGAGCu -3'
miRNA:   3'- gCCGCC-Ga--UGGUUUgGCU-------------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19251 0.7 0.462924
Target:  5'- cCGGCGGCUGCgc-ACCGAGGaaccCGAcGUg -3'
miRNA:   3'- -GCCGCCGAUGguuUGGCUUCa---GCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 15734 0.67 0.604891
Target:  5'- aCGGCGGCgucGCCGuggcgcuuGCCGucGUCcuGGCc -3'
miRNA:   3'- -GCCGCCGa--UGGUu-------UGGCuuCAGc-UCG- -5'
27695 3' -53.9 NC_005882.1 + 17123 0.68 0.559885
Target:  5'- gCGGacaaGGUguUCAGugCGgcGUCGAGCg -3'
miRNA:   3'- -GCCg---CCGauGGUUugGCuuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 17646 0.7 0.462924
Target:  5'- aGGCgccacgGGCUGCCGAGCUGAaccuGGUUGAcuucGCc -3'
miRNA:   3'- gCCG------CCGAUGGUUUGGCU----UCAGCU----CG- -5'
27695 3' -53.9 NC_005882.1 + 5399 0.76 0.184999
Target:  5'- uGGCGGUUGCCucGCCGGaaAGUCGGa- -3'
miRNA:   3'- gCCGCCGAUGGuuUGGCU--UCAGCUcg -5'
27695 3' -53.9 NC_005882.1 + 4898 0.68 0.571066
Target:  5'- aGGCGGCaaagcagAUCAAgGCCGcuGUCGaAGCu -3'
miRNA:   3'- gCCGCCGa------UGGUU-UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 25734 0.76 0.212358
Target:  5'- uGGCGGcCUGCCGAacagcGCCGAuuaCGGGCg -3'
miRNA:   3'- gCCGCC-GAUGGUU-----UGGCUucaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 30873 0.7 0.432565
Target:  5'- gGGcCGGCUGCCAgugAACgGAGGUgaugucggaGAGCu -3'
miRNA:   3'- gCC-GCCGAUGGU---UUGgCUUCAg--------CUCG- -5'
27695 3' -53.9 NC_005882.1 + 18502 0.68 0.5981
Target:  5'- gCGGCGuauuccuuguuGCUGCCGAugacgGCCGAAuugucgucgugauccGUCGAGa -3'
miRNA:   3'- -GCCGC-----------CGAUGGUU-----UGGCUU---------------CAGCUCg -5'
27695 3' -53.9 NC_005882.1 + 3364 0.67 0.616229
Target:  5'- gCGGCcugGGCUACCGcgugcuGGCCGAAGagaucUCGccGCg -3'
miRNA:   3'- -GCCG---CCGAUGGU------UUGGCUUC-----AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 10769 0.73 0.299946
Target:  5'- cCGGCGGUUGugAuACCGGA-UCGAGCg -3'
miRNA:   3'- -GCCGCCGAUggUuUGGCUUcAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 24127 0.72 0.366504
Target:  5'- cCGGCaGCUcgACCuuGCCGAucauGcCGAGCg -3'
miRNA:   3'- -GCCGcCGA--UGGuuUGGCUu---CaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.