Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27695 | 5' | -59.5 | NC_005882.1 | + | 33160 | 0.68 | 0.309642 |
Target: 5'- gGCGCUUgGCCGaCCAGuuCGGCAagccuugccgcGAGGu -3' miRNA: 3'- -CGCGAG-CGGCaGGUCcgGCCGU-----------UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 32295 | 0.69 | 0.240578 |
Target: 5'- uGCuCUUGCCG-CCAGcGCUGGCGAAa- -3' miRNA: 3'- -CGcGAGCGGCaGGUC-CGGCCGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 32191 | 0.69 | 0.271988 |
Target: 5'- gGCGCgggacgauaucgCGCC--CCAGGCCGGCGGc-- -3' miRNA: 3'- -CGCGa-----------GCGGcaGGUCCGGCCGUUucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 29999 | 1.11 | 0.000188 |
Target: 5'- gGCGCUCGCCGUCCAGGCCGGCAAAGGc -3' miRNA: 3'- -CGCGAGCGGCAGGUCCGGCCGUUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 29753 | 0.66 | 0.401896 |
Target: 5'- uGCgGCUUuCCG-CaCGGGCCGGCuccAAGGc -3' miRNA: 3'- -CG-CGAGcGGCaG-GUCCGGCCGu--UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 28711 | 0.73 | 0.137003 |
Target: 5'- cGCuGCUCGCCGUCgAGaGCUGGCccgcGGc -3' miRNA: 3'- -CG-CGAGCGGCAGgUC-CGGCCGuuu-CC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 27867 | 0.66 | 0.414828 |
Target: 5'- gGCGCUCGCgcuucgcgagcagguCGucgagcaugcgcUCCAGGUCGcGCAAcgacAGGu -3' miRNA: 3'- -CGCGAGCG---------------GC------------AGGUCCGGC-CGUU----UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 27018 | 0.68 | 0.287452 |
Target: 5'- cGCGCUCGUCGUU--GGCCGcGCGc--- -3' miRNA: 3'- -CGCGAGCGGCAGguCCGGC-CGUuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 26064 | 0.66 | 0.411107 |
Target: 5'- -aGCUUGCCG-CCguAGGCCGcGCGGu-- -3' miRNA: 3'- cgCGAGCGGCaGG--UCCGGC-CGUUucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25772 | 0.67 | 0.357863 |
Target: 5'- uGCGguaaUCGCgaUGUCgcgCAGGCCGGCuucGAAGGu -3' miRNA: 3'- -CGCg---AGCG--GCAG---GUCCGGCCG---UUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25633 | 0.71 | 0.184852 |
Target: 5'- aGCGCggCGCCGcgcgccagCCGGGUC-GCAAGGGc -3' miRNA: 3'- -CGCGa-GCGGCa-------GGUCCGGcCGUUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25258 | 0.66 | 0.392818 |
Target: 5'- cGUGCUCGCCGUCU-GGCUGuuCAucGa -3' miRNA: 3'- -CGCGAGCGGCAGGuCCGGCc-GUuuCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25168 | 0.67 | 0.333113 |
Target: 5'- cGgGC-CgGCCGUCguGGCCGGCu---- -3' miRNA: 3'- -CgCGaG-CGGCAGguCCGGCCGuuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 24695 | 0.69 | 0.249414 |
Target: 5'- uGCGCUUGCCGcgacgcaacgucaguUCCGugagcgucuGGCCGGUAGcgaguuugacGGGa -3' miRNA: 3'- -CGCGAGCGGC---------------AGGU---------CCGGCCGUU----------UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 23228 | 0.77 | 0.069613 |
Target: 5'- gGCGCUgGCCGggCgCGGGCCGGC--GGGc -3' miRNA: 3'- -CGCGAgCGGCa-G-GUCCGGCCGuuUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 21349 | 0.67 | 0.333113 |
Target: 5'- aCGCUCGCCGaCCugaagcuGGCCGuGCc--GGa -3' miRNA: 3'- cGCGAGCGGCaGGu------CCGGC-CGuuuCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 21248 | 0.66 | 0.375065 |
Target: 5'- aUGCUCGUCGaCCGGugcGCCGGCcaugaccAGGa -3' miRNA: 3'- cGCGAGCGGCaGGUC---CGGCCGuu-----UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 19269 | 0.67 | 0.333113 |
Target: 5'- cGCGCagGCCcUUgaGGGCCGGCGgcugcgcaccGAGGa -3' miRNA: 3'- -CGCGagCGGcAGg-UCCGGCCGU----------UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 16710 | 0.68 | 0.302103 |
Target: 5'- cGCGCgCGuCCG-CgCAGGCCgGGCuuGAGGu -3' miRNA: 3'- -CGCGaGC-GGCaG-GUCCGG-CCGu-UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 15718 | 0.75 | 0.097972 |
Target: 5'- gGCGCUUGCCGucgUCCuGGCCGGUcgcgcGGa -3' miRNA: 3'- -CGCGAGCGGC---AGGuCCGGCCGuuu--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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