miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27696 3' -55.2 NC_005882.1 + 15980 0.66 0.663976
Target:  5'- ----cGCGAgcugCGCGCgGACgCGCACGUc -3'
miRNA:   3'- gcucaUGCUa---GCGCG-CUGgGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 8215 0.66 0.663976
Target:  5'- gCGAGUgACGAaaUCG-GCa--CCGCACGCg -3'
miRNA:   3'- -GCUCA-UGCU--AGCgCGcugGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 3414 0.66 0.653961
Target:  5'- gGAGUGCGucUCGCGUcucacguugcugaacGCUUGCGCGCg -3'
miRNA:   3'- gCUCAUGCu-AGCGCGc--------------UGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 12377 0.66 0.652847
Target:  5'- uCGA--GCGGUucaaCGC-CGGCCgGCACGCg -3'
miRNA:   3'- -GCUcaUGCUA----GCGcGCUGGgUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 6541 0.66 0.652847
Target:  5'- gCGGG-ACG-UCGUcuccguccgcaGCGGCCUugACGCc -3'
miRNA:   3'- -GCUCaUGCuAGCG-----------CGCUGGGugUGCG- -5'
27696 3' -55.2 NC_005882.1 + 21687 0.66 0.652847
Target:  5'- ----gACGAUCG-GCGACCCGaGCGg -3'
miRNA:   3'- gcucaUGCUAGCgCGCUGGGUgUGCg -5'
27696 3' -55.2 NC_005882.1 + 31059 0.66 0.652847
Target:  5'- ----gGCgGAUCGCGuCGACCgACucGCGCa -3'
miRNA:   3'- gcucaUG-CUAGCGC-GCUGGgUG--UGCG- -5'
27696 3' -55.2 NC_005882.1 + 6143 0.66 0.641698
Target:  5'- cCGuuGUcCGAUaGCGCGAUUCaACGCGCg -3'
miRNA:   3'- -GCu-CAuGCUAgCGCGCUGGG-UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 15046 0.66 0.641698
Target:  5'- --cGUACGA-CGCGCGAauauccuugaCCCAcUugGCu -3'
miRNA:   3'- gcuCAUGCUaGCGCGCU----------GGGU-GugCG- -5'
27696 3' -55.2 NC_005882.1 + 12688 0.66 0.641698
Target:  5'- uCGAGcuugGCGAccuUCGCGUcGCCgGCaaGCGCa -3'
miRNA:   3'- -GCUCa---UGCU---AGCGCGcUGGgUG--UGCG- -5'
27696 3' -55.2 NC_005882.1 + 29737 0.66 0.641698
Target:  5'- aCGAGcgGCGAcaCGCuGCGGCuuuCCGCACGg -3'
miRNA:   3'- -GCUCa-UGCUa-GCG-CGCUG---GGUGUGCg -5'
27696 3' -55.2 NC_005882.1 + 32689 0.66 0.630541
Target:  5'- uCGGGUcauccugcuCGAUCGCGCGAUCaccaACGaucaaGCg -3'
miRNA:   3'- -GCUCAu--------GCUAGCGCGCUGGg---UGUg----CG- -5'
27696 3' -55.2 NC_005882.1 + 25567 0.66 0.630541
Target:  5'- ---uUGCGAcccggcuggCGCGCGGCgCCGCGCuGCg -3'
miRNA:   3'- gcucAUGCUa--------GCGCGCUG-GGUGUG-CG- -5'
27696 3' -55.2 NC_005882.1 + 1277 0.66 0.630541
Target:  5'- -cGGUAgaugGAUCGaGCGGCCUGCGCGUc -3'
miRNA:   3'- gcUCAUg---CUAGCgCGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 19846 0.66 0.619385
Target:  5'- uCGAGUACGG-CGagaaCGuCGAUCCgaaGCGCGCc -3'
miRNA:   3'- -GCUCAUGCUaGC----GC-GCUGGG---UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 23179 0.66 0.61827
Target:  5'- uCGGG-GCGAUCGCGUacaucgaugcgccGAUCgGCACGa -3'
miRNA:   3'- -GCUCaUGCUAGCGCG-------------CUGGgUGUGCg -5'
27696 3' -55.2 NC_005882.1 + 3311 0.67 0.60824
Target:  5'- ----cGCGGUagcccaggcCGCGCagcGCCCGCGCGCa -3'
miRNA:   3'- gcucaUGCUA---------GCGCGc--UGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 14384 0.67 0.597117
Target:  5'- gGAcgGCGggCGCaCGAUCCGCACGg -3'
miRNA:   3'- gCUcaUGCuaGCGcGCUGGGUGUGCg -5'
27696 3' -55.2 NC_005882.1 + 11641 0.67 0.590457
Target:  5'- aCGAGgAUGAUCGCgGCGACgagccagcucgucagCCGCgggaaGCGCu -3'
miRNA:   3'- -GCUCaUGCUAGCG-CGCUG---------------GGUG-----UGCG- -5'
27696 3' -55.2 NC_005882.1 + 27084 0.67 0.586024
Target:  5'- aGGGaGCag-CGCGCGGCCaacgacgaGCGCGCc -3'
miRNA:   3'- gCUCaUGcuaGCGCGCUGGg-------UGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.