miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27699 3' -59.2 NC_005882.1 + 18169 0.66 0.383997
Target:  5'- aAGCCgGCcaucaGAAGGCuGGCGCgaUGCGCa- -3'
miRNA:   3'- gUCGGgCG-----CUUCUG-CUGCG--ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30336 0.66 0.37499
Target:  5'- aCAGCCggUGCGAGGACGGUGUgauucucgGCGCc- -3'
miRNA:   3'- -GUCGG--GCGCUUCUGCUGCGa-------CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30008 0.66 0.366128
Target:  5'- gUAGCcgccgCCGCGAucgAGACGAUGUcGCGCc- -3'
miRNA:   3'- -GUCG-----GGCGCU---UCUGCUGCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 6852 0.66 0.366128
Target:  5'- gAGCuggCCGCGAAGAaGACGC-GCGUc- -3'
miRNA:   3'- gUCG---GGCGCUUCUgCUGCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 2702 0.66 0.34884
Target:  5'- gGGCuuGUGGuccgGACGCUGCGCa- -3'
miRNA:   3'- gUCGggCGCUucugCUGCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 21096 0.66 0.340417
Target:  5'- gCAGCCggCGCGAAGGCGcucgGCGUUGC-Cg- -3'
miRNA:   3'- -GUCGG--GCGCUUCUGC----UGCGACGcGaa -5'
27699 3' -59.2 NC_005882.1 + 135 0.66 0.340417
Target:  5'- aGGCCCGCGAGGGCcGCGUcagGC-Cg- -3'
miRNA:   3'- gUCGGGCGCUUCUGcUGCGa--CGcGaa -5'
27699 3' -59.2 NC_005882.1 + 21591 0.67 0.324016
Target:  5'- -uGCCCGuCGAccGGAaGGCGCcGCGCUc -3'
miRNA:   3'- guCGGGC-GCU--UCUgCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 19399 0.67 0.324016
Target:  5'- aAGUCgCGCGAcaAGACGAUGCgccgaccaGCGCa- -3'
miRNA:   3'- gUCGG-GCGCU--UCUGCUGCGa-------CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 25549 0.67 0.30821
Target:  5'- uGGCCgCGCagcucGGCGAUGUUGCGCa- -3'
miRNA:   3'- gUCGG-GCGcuu--CUGCUGCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 25560 0.67 0.299772
Target:  5'- gCGGCCCuuGCGAcccGGcuggcgcGCGGCGCcGCGCUg -3'
miRNA:   3'- -GUCGGG--CGCU---UC-------UGCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 34044 0.67 0.292256
Target:  5'- aCAGCUCgaaacuuGCGAcGACGGCGUucauucaaggUGCGCUUg -3'
miRNA:   3'- -GUCGGG-------CGCUuCUGCUGCG----------ACGCGAA- -5'
27699 3' -59.2 NC_005882.1 + 1391 0.68 0.28126
Target:  5'- aCGGCCCGCuccAGGCGuuucugaagcuguuUGCUGCGCg- -3'
miRNA:   3'- -GUCGGGCGcu-UCUGCu-------------GCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 16767 0.68 0.271295
Target:  5'- cCGGCCUGCGcGGACG-CGC-GCGUc- -3'
miRNA:   3'- -GUCGGGCGCuUCUGCuGCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 25408 0.68 0.264353
Target:  5'- uCGGCCgCGuCGccGACGA-GCUGCGCg- -3'
miRNA:   3'- -GUCGG-GC-GCuuCUGCUgCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 3295 0.68 0.263667
Target:  5'- uCGGCCCguaccucGCGAAGucgucCGACguGCUGCGCg- -3'
miRNA:   3'- -GUCGGG-------CGCUUCu----GCUG--CGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 13334 0.68 0.257556
Target:  5'- -uGCgCCGCGAAGACuACG-UGCGCa- -3'
miRNA:   3'- guCG-GGCGCUUCUGcUGCgACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 23286 0.68 0.257556
Target:  5'- cCGGCCCGCGcccGGCcaGCGCcUGCGCg- -3'
miRNA:   3'- -GUCGGGCGCuu-CUGc-UGCG-ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 2429 0.68 0.250902
Target:  5'- cCAGCUCGCGA--ACGAgGCgaucGCGCUc -3'
miRNA:   3'- -GUCGGGCGCUucUGCUgCGa---CGCGAa -5'
27699 3' -59.2 NC_005882.1 + 4764 0.68 0.250902
Target:  5'- cCGGCCCGCGA--GCGGgucaacagcaacCGCUGCaGCUc -3'
miRNA:   3'- -GUCGGGCGCUucUGCU------------GCGACG-CGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.