miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 35897 0.66 0.785554
Target:  5'- -cCGGCAgaagGCAGCgaucGCGAcGCUgacCGCAACa -3'
miRNA:   3'- aaGCUGU----UGUCG----UGCUuCGA---GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 34441 1.09 0.001235
Target:  5'- aUUCGACAACAGCACGAAGCUCGCAACg -3'
miRNA:   3'- -AAGCUGUUGUCGUGCUUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 34036 0.78 0.177506
Target:  5'- gUUCGAUAACAGCuCGAAaCUUGCGACg -3'
miRNA:   3'- -AAGCUGUUGUCGuGCUUcGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 33647 0.77 0.223485
Target:  5'- aUUCGACAACAcgACGAAaCUCGCGACg -3'
miRNA:   3'- -AAGCUGUUGUcgUGCUUcGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 32457 0.66 0.752834
Target:  5'- -gCGAgGACGGCugGAGuCUCGCc-- -3'
miRNA:   3'- aaGCUgUUGUCGugCUUcGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 31589 0.66 0.763903
Target:  5'- aUCGGgAACGGCugGcAGC-CGgGGCa -3'
miRNA:   3'- aAGCUgUUGUCGugCuUCGaGCgUUG- -5'
27704 3' -51.4 NC_005882.1 + 31487 0.66 0.763903
Target:  5'- -aCGAgCGACGGCGCugucucGUUCGCGACc -3'
miRNA:   3'- aaGCU-GUUGUCGUGcuu---CGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 31102 0.72 0.392216
Target:  5'- aUCGACGgaaugACAcGCACGAc-CUCGCAGCg -3'
miRNA:   3'- aAGCUGU-----UGU-CGUGCUucGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 29741 0.67 0.726858
Target:  5'- -gCGGCGACAcgcugcggcuuuccGCACGGgccGGCUCcaagGCAACg -3'
miRNA:   3'- aaGCUGUUGU--------------CGUGCU---UCGAG----CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 29285 0.67 0.718829
Target:  5'- gUCGACGGCGGUucguCGAAGCcaaucUCGuCGAUc -3'
miRNA:   3'- aAGCUGUUGUCGu---GCUUCG-----AGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 29170 0.66 0.752834
Target:  5'- aUCGGCuacgcCGGCGCGccguuGCUCGCGuGCg -3'
miRNA:   3'- aAGCUGuu---GUCGUGCuu---CGAGCGU-UG- -5'
27704 3' -51.4 NC_005882.1 + 29100 0.66 0.763903
Target:  5'- gUCGGuauacgccacCGACAGCACGuAGggCGCGAUg -3'
miRNA:   3'- aAGCU----------GUUGUCGUGCuUCgaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 28926 0.7 0.531071
Target:  5'- aUCGACAGC-GCaAUGccGCUCGCGAg -3'
miRNA:   3'- aAGCUGUUGuCG-UGCuuCGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 28890 0.66 0.785554
Target:  5'- aUCGGCAc--GCugG-GGUUCGCGGCa -3'
miRNA:   3'- aAGCUGUuguCGugCuUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 28659 0.74 0.31934
Target:  5'- cUCGACGgcgaGCAGCGCGcuAAGUUCcGCGGCg -3'
miRNA:   3'- aAGCUGU----UGUCGUGC--UUCGAG-CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 27973 0.71 0.486056
Target:  5'- gUUCGGCGuaguCGGCAcCGAAGgUCGCAu- -3'
miRNA:   3'- -AAGCUGUu---GUCGU-GCUUCgAGCGUug -5'
27704 3' -51.4 NC_005882.1 + 27802 0.69 0.589275
Target:  5'- cUCGACGACcuGCucGCGAAGCgcgagCGCcGCg -3'
miRNA:   3'- aAGCUGUUGu-CG--UGCUUCGa----GCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 27447 0.66 0.763903
Target:  5'- gUUCGGCAGCAacGUgaaaGCGuGGUUCGCGAa -3'
miRNA:   3'- -AAGCUGUUGU--CG----UGCuUCGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 26935 0.7 0.554147
Target:  5'- uUUCGGCAugggGCgGGCGCGGccggcaAGUUCGCGGCc -3'
miRNA:   3'- -AAGCUGU----UG-UCGUGCU------UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26763 0.76 0.250066
Target:  5'- -cCGugAuCGGCAUGAAGgUCGCGACg -3'
miRNA:   3'- aaGCugUuGUCGUGCUUCgAGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.