miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 10674 0.75 0.271674
Target:  5'- gUCGGCAGCGGCG-GAGGCggcgGCAGCg -3'
miRNA:   3'- aAGCUGUUGUCGUgCUUCGag--CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 29285 0.67 0.718829
Target:  5'- gUCGACGGCGGUucguCGAAGCcaaucUCGuCGAUc -3'
miRNA:   3'- aAGCUGUUGUCGu---GCUUCG-----AGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 17223 0.67 0.730283
Target:  5'- cUCGGcCAGCAuGC-CGAgcAGCUCGuCGGCa -3'
miRNA:   3'- aAGCU-GUUGU-CGuGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 11878 0.65 0.792962
Target:  5'- -gCGGCGA-AGCAUGGccgcggcgaacaccAGCUCGUAGCc -3'
miRNA:   3'- aaGCUGUUgUCGUGCU--------------UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 27973 0.71 0.486056
Target:  5'- gUUCGGCGuaguCGGCAcCGAAGgUCGCAu- -3'
miRNA:   3'- -AAGCUGUu---GUCGU-GCUUCgAGCGUug -5'
27704 3' -51.4 NC_005882.1 + 11725 0.7 0.508353
Target:  5'- -gCGACGACGGcCGCGAGGCUgaCGaGACu -3'
miRNA:   3'- aaGCUGUUGUC-GUGCUUCGA--GCgUUG- -5'
27704 3' -51.4 NC_005882.1 + 28926 0.7 0.531071
Target:  5'- aUCGACAGC-GCaAUGccGCUCGCGAg -3'
miRNA:   3'- aAGCUGUUGuCG-UGCuuCGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 13784 0.7 0.542568
Target:  5'- cUUGGcCGGCcGCGCGAugcccGGCUCGCAAUc -3'
miRNA:   3'- aAGCU-GUUGuCGUGCU-----UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 17323 0.68 0.670977
Target:  5'- gUCGACcGCuucaGGCAUggagacgcccccaGAGGUUCGCGACg -3'
miRNA:   3'- aAGCUGuUG----UCGUG-------------CUUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 12981 0.67 0.718829
Target:  5'- -cCGGCGGCAGCACu--GgUCGCGGg -3'
miRNA:   3'- aaGCUGUUGUCGUGcuuCgAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 11653 0.68 0.672157
Target:  5'- -gCGAUGGCuGCaACGAGGaugaUCGCGGCg -3'
miRNA:   3'- aaGCUGUUGuCG-UGCUUCg---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 2501 0.68 0.636642
Target:  5'- aUCGAcCGugAGCGCGAucgccucGUUCGCGAg -3'
miRNA:   3'- aAGCU-GUugUCGUGCUu------CGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 2827 0.75 0.271674
Target:  5'- aUUCGACcuGGCGGCGCGAAGCaauacgaCGUAGCu -3'
miRNA:   3'- -AAGCUG--UUGUCGUGCUUCGa------GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 22054 0.67 0.707275
Target:  5'- -cUGGC-GCAGCACGA---UCGCGACg -3'
miRNA:   3'- aaGCUGuUGUCGUGCUucgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14165 0.73 0.354459
Target:  5'- cUUgGACAGCAGCGCGAuacGUUCGCc-- -3'
miRNA:   3'- -AAgCUGUUGUCGUGCUu--CGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 21571 0.69 0.57751
Target:  5'- -gCGACAGCGGCAgGuuguAGCggccgCGCAAg -3'
miRNA:   3'- aaGCUGUUGUCGUgCu---UCGa----GCGUUg -5'
27704 3' -51.4 NC_005882.1 + 3938 0.67 0.707275
Target:  5'- aUCGACGAagcGCACGcgcuGCcgaUCGCGACg -3'
miRNA:   3'- aAGCUGUUgu-CGUGCuu--CG---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 18698 0.67 0.730283
Target:  5'- --aGGCGcgcAgAGCGCGAucGGCUCGuCGACa -3'
miRNA:   3'- aagCUGU---UgUCGUGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 31102 0.72 0.392216
Target:  5'- aUCGACGgaaugACAcGCACGAc-CUCGCAGCg -3'
miRNA:   3'- aAGCUGU-----UGU-CGUGCUucGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26693 0.7 0.531071
Target:  5'- -aCGGCAGCAGCGCGcGGCcaacCGUGAUc -3'
miRNA:   3'- aaGCUGUUGUCGUGCuUCGa---GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.