miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27957 5' -55.4 NC_005886.2 + 36231 0.66 0.68953
Target:  5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCg -3'
miRNA:   3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5'
27957 5' -55.4 NC_005886.2 + 36180 0.66 0.68953
Target:  5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCa -3'
miRNA:   3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5'
27957 5' -55.4 NC_005886.2 + 29741 0.66 0.678535
Target:  5'- cGgGGUGCGGCGa----GGCAUUCGCUu -3'
miRNA:   3'- -CgUCACGCCGUgggcgUUGUAAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 4002 0.66 0.677433
Target:  5'- -gAGUGCGcaauacuGCGCCCGUucccGCAgcUUGCCa -3'
miRNA:   3'- cgUCACGC-------CGUGGGCGu---UGUa-AGCGG- -5'
27957 5' -55.4 NC_005886.2 + 32017 0.66 0.667495
Target:  5'- -gGGUGCuGCGCUCGCAcCGgaUCGCa -3'
miRNA:   3'- cgUCACGcCGUGGGCGUuGUa-AGCGg -5'
27957 5' -55.4 NC_005886.2 + 14392 0.66 0.656421
Target:  5'- aCAGuUGgGGCA-CCGCAACGUgCGUg -3'
miRNA:   3'- cGUC-ACgCCGUgGGCGUUGUAaGCGg -5'
27957 5' -55.4 NC_005886.2 + 44401 0.66 0.645325
Target:  5'- cGCAcauuCGGUAUCCGCAACAacUUUGCg -3'
miRNA:   3'- -CGUcac-GCCGUGGGCGUUGU--AAGCGg -5'
27957 5' -55.4 NC_005886.2 + 22745 0.66 0.641993
Target:  5'- -aGGUGCaacuaugaaauucauCAUcgCCGCAGCAUUCGCCg -3'
miRNA:   3'- cgUCACGcc-------------GUG--GGCGUUGUAAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 35137 0.66 0.63866
Target:  5'- cCAGUGCGcacgcCGCCCGCGaaacucaacgcguguACGUUCGaaCCa -3'
miRNA:   3'- cGUCACGCc----GUGGGCGU---------------UGUAAGC--GG- -5'
27957 5' -55.4 NC_005886.2 + 13126 0.66 0.634216
Target:  5'- -aGGUGCGucGUAUaUCGCAGCAU-CGCCg -3'
miRNA:   3'- cgUCACGC--CGUG-GGCGUUGUAaGCGG- -5'
27957 5' -55.4 NC_005886.2 + 46244 0.66 0.630882
Target:  5'- uGCAGUugccggaagacuucGCGGUuCCCGCAugGgUCGaCUa -3'
miRNA:   3'- -CGUCA--------------CGCCGuGGGCGUugUaAGC-GG- -5'
27957 5' -55.4 NC_005886.2 + 16726 0.67 0.623105
Target:  5'- uGCGG-GCGGCucCCCGCugUGggCGCa -3'
miRNA:   3'- -CGUCaCGCCGu-GGGCGuuGUaaGCGg -5'
27957 5' -55.4 NC_005886.2 + 3447 0.67 0.612002
Target:  5'- gGCGGUGCaGGaACCgGC-ACGaUUGCCg -3'
miRNA:   3'- -CGUCACG-CCgUGGgCGuUGUaAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 38643 0.67 0.600917
Target:  5'- gGUAGaUGCGGCGCggGCGACGUugagaaucaccUCGUCc -3'
miRNA:   3'- -CGUC-ACGCCGUGggCGUUGUA-----------AGCGG- -5'
27957 5' -55.4 NC_005886.2 + 2092 0.67 0.589859
Target:  5'- ----cGcCGGCACCuCGCAACGccUGCCg -3'
miRNA:   3'- cgucaC-GCCGUGG-GCGUUGUaaGCGG- -5'
27957 5' -55.4 NC_005886.2 + 41999 0.68 0.555848
Target:  5'- cGUAG-GCGGUcuugcugGCCuCGCAACAcagccCGCCa -3'
miRNA:   3'- -CGUCaCGCCG-------UGG-GCGUUGUaa---GCGG- -5'
27957 5' -55.4 NC_005886.2 + 31693 0.68 0.546075
Target:  5'- gGCAG-GCGGUcCCCGUGaagaccuuguGCGUUUGCg -3'
miRNA:   3'- -CGUCaCGCCGuGGGCGU----------UGUAAGCGg -5'
27957 5' -55.4 NC_005886.2 + 16677 0.68 0.535282
Target:  5'- cGCAccGUuCGGCA-CUGCGACGUaCGCCg -3'
miRNA:   3'- -CGU--CAcGCCGUgGGCGUUGUAaGCGG- -5'
27957 5' -55.4 NC_005886.2 + 13716 0.68 0.535282
Target:  5'- -gGGUGUGGCugC-GCAACAgcagaUCGCg -3'
miRNA:   3'- cgUCACGCCGugGgCGUUGUa----AGCGg -5'
27957 5' -55.4 NC_005886.2 + 20430 0.68 0.535282
Target:  5'- cGC-GUGaGGCACgUCGCGACAUccUCGCa -3'
miRNA:   3'- -CGuCACgCCGUG-GGCGUUGUA--AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.