miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 21547 0.66 0.55311
Target:  5'- aCGA--CGCUGCAGG-CGAcCGGCGCa -3'
miRNA:   3'- aGCUccGCGGCGUCCaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 18396 0.66 0.55311
Target:  5'- cCGAGGuCGUCGguGcGUgcgCAGACGGcCGCg -3'
miRNA:   3'- aGCUCC-GCGGCguC-CA---GUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 34935 0.66 0.55311
Target:  5'- aCGAGGCgGCgGCGGGUgcGACcguGGCGa -3'
miRNA:   3'- aGCUCCG-CGgCGUCCAguUUG---UCGUg -5'
27996 5' -56.7 NC_005887.1 + 6043 0.66 0.542169
Target:  5'- cCGGguGGUGCUGguGG-CAGcggcGCGGCACu -3'
miRNA:   3'- aGCU--CCGCGGCguCCaGUU----UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2488 0.66 0.542169
Target:  5'- gCGAGGCGCUcaGCGgugagcGGUCGauugaugugcGACGGCGg -3'
miRNA:   3'- aGCUCCGCGG--CGU------CCAGU----------UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 10612 0.66 0.532384
Target:  5'- aCGGGGCGCagcgaagcguuugcaGCAGG-CAGaacGCcGCACg -3'
miRNA:   3'- aGCUCCGCGg--------------CGUCCaGUU---UGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 17284 0.66 0.531301
Target:  5'- gUCGGgcGGCGCCGCGcgcgcaaacgccGGUU---CGGCGCa -3'
miRNA:   3'- -AGCU--CCGCGGCGU------------CCAGuuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 12708 0.66 0.531301
Target:  5'- aCGc-GCGCaCGCuGGUCGcGCAGCAg -3'
miRNA:   3'- aGCucCGCG-GCGuCCAGUuUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 19181 0.66 0.520513
Target:  5'- cCGuGaGCGgCGCGGGcguggagaCAGGCGGCGCg -3'
miRNA:   3'- aGCuC-CGCgGCGUCCa-------GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 29847 0.66 0.520513
Target:  5'- uUUGAGGaUGUCGCAGG-CGAugaacacguccuGCGGCAg -3'
miRNA:   3'- -AGCUCC-GCGGCGUCCaGUU------------UGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 1388 0.66 0.519439
Target:  5'- aUC-AGGC-CCGCGccgaagcGGUCGAGCAuGCGCu -3'
miRNA:   3'- -AGcUCCGcGGCGU-------CCAGUUUGU-CGUG- -5'
27996 5' -56.7 NC_005887.1 + 16858 0.66 0.509812
Target:  5'- gCGAGGUGuaCCGCGGcG-CGGACGGCuCg -3'
miRNA:   3'- aGCUCCGC--GGCGUC-CaGUUUGUCGuG- -5'
27996 5' -56.7 NC_005887.1 + 34983 0.66 0.509812
Target:  5'- aCGcGGCGuuGUcgucGGUCu-GCAGCGCg -3'
miRNA:   3'- aGCuCCGCggCGu---CCAGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32796 0.67 0.488695
Target:  5'- aUCGGcGcGCGCCGCuucacGGgcaCGAACAGCGg -3'
miRNA:   3'- -AGCU-C-CGCGGCGu----CCa--GUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 34845 0.67 0.488695
Target:  5'- cUCGGGGUcguGCCGCcgaGGGUguaguucaagcgCAggUAGCGCu -3'
miRNA:   3'- -AGCUCCG---CGGCG---UCCA------------GUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 7217 0.67 0.488695
Target:  5'- gCGcAGGCGCUGuCGGcGUCGGGC-GCAUc -3'
miRNA:   3'- aGC-UCCGCGGC-GUC-CAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 20121 0.67 0.48244
Target:  5'- uUCGAGGCguacaacuacuaucaGCUGUGGGaugcgcaaacgUCAAGCGGCGg -3'
miRNA:   3'- -AGCUCCG---------------CGGCGUCC-----------AGUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 5822 0.67 0.478291
Target:  5'- aUCGAGuCGgCGCGGGUCGcgAAgGGCGa -3'
miRNA:   3'- -AGCUCcGCgGCGUCCAGU--UUgUCGUg -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.