Results 21 - 40 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 39197 | 0.67 | 0.467997 |
Target: 5'- gUCGAGGCGCgGCA--UCAggUAGUc- -3' miRNA: 3'- -AGCUCCGCGgCGUccAGUuuGUCGug -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 35221 | 0.67 | 0.464932 |
Target: 5'- gUUGAacGGCGCCGCAGcgccgccccgccucGUUAGACcacGCGCg -3' miRNA: 3'- -AGCU--CCGCGGCGUC--------------CAGUUUGu--CGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 31954 | 0.67 | 0.457819 |
Target: 5'- uUCGAGGUGCCcgaggccgGCGauaGUCGAcguCGGCACg -3' miRNA: 3'- -AGCUCCGCGG--------CGUc--CAGUUu--GUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 9282 | 0.67 | 0.457819 |
Target: 5'- gUCGGcacGGCgacGCCGCAGGUUAcg-GGCACc -3' miRNA: 3'- -AGCU---CCG---CGGCGUCCAGUuugUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 25127 | 0.67 | 0.457819 |
Target: 5'- cCGAGauccaGCGCCGCagcugcAGGUCGucgAGCACa -3' miRNA: 3'- aGCUC-----CGCGGCG------UCCAGUuugUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 40731 | 0.67 | 0.457819 |
Target: 5'- uUCGAGGuCGCCGCccgcGUCGAGgcgaucgccguUGGCGCg -3' miRNA: 3'- -AGCUCC-GCGGCGuc--CAGUUU-----------GUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 41541 | 0.67 | 0.457819 |
Target: 5'- gCGAGGCGCucggcgcgcaCGCGaaGUCAGcCAGCGCc -3' miRNA: 3'- aGCUCCGCG----------GCGUc-CAGUUuGUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 1762 | 0.67 | 0.457819 |
Target: 5'- gUCGAGGaaCCGCGGGUUGuacuuGCucgAGCGCg -3' miRNA: 3'- -AGCUCCgcGGCGUCCAGUu----UG---UCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 24378 | 0.67 | 0.44776 |
Target: 5'- aCGAGccGCGCUGCAGGUCGAuCAa--- -3' miRNA: 3'- aGCUC--CGCGGCGUCCAGUUuGUcgug -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 6334 | 0.68 | 0.441784 |
Target: 5'- cCGAGGUgacGCUGCuGGUUGAACaacggcuguccaucgAGCACa -3' miRNA: 3'- aGCUCCG---CGGCGuCCAGUUUG---------------UCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 6479 | 0.68 | 0.437825 |
Target: 5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3' miRNA: 3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 6381 | 0.68 | 0.437825 |
Target: 5'- aCG-GGCGaaCGCGGGgCGAAgGGCACg -3' miRNA: 3'- aGCuCCGCg-GCGUCCaGUUUgUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 2183 | 0.68 | 0.437825 |
Target: 5'- cUGAcGCcgGCCGCGGuGaUCGGGCAGCGCa -3' miRNA: 3'- aGCUcCG--CGGCGUC-C-AGUUUGUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 21865 | 0.68 | 0.437825 |
Target: 5'- aCGAcuGGCGCacaGCAGcUCAu-CAGCACg -3' miRNA: 3'- aGCU--CCGCGg--CGUCcAGUuuGUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 35462 | 0.68 | 0.428017 |
Target: 5'- cCGAGGCGuUCGUu-GUCGAGCAGguCg -3' miRNA: 3'- aGCUCCGC-GGCGucCAGUUUGUCguG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 28053 | 0.68 | 0.428017 |
Target: 5'- aUCGAgcaGGCGCUGCGccacccauguucGGUCAcGCuGCAUg -3' miRNA: 3'- -AGCU---CCGCGGCGU------------CCAGUuUGuCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 13629 | 0.68 | 0.428017 |
Target: 5'- gCGcGGCgGCCGCAcucaGcCGAGCAGCACc -3' miRNA: 3'- aGCuCCG-CGGCGUc---CaGUUUGUCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 2637 | 0.68 | 0.418341 |
Target: 5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3' miRNA: 3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 26205 | 0.68 | 0.418341 |
Target: 5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3' miRNA: 3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5' |
|||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 28925 | 0.68 | 0.418341 |
Target: 5'- gCGGuGCGCCGCucGUCGcAGCAGCGg -3' miRNA: 3'- aGCUcCGCGGCGucCAGU-UUGUCGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home