miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 42005 0.67 0.539773
Target:  5'- ---uGCGGCCCACguCGAgugUCGCCGcggCGCg -3'
miRNA:   3'- caagUGCUGGGUG--GCU---AGCGGCa--GUG- -5'
28000 5' -55.7 NC_005887.1 + 40857 0.7 0.407587
Target:  5'- --gCACGGCCgCGCCGcgcgagCGCCG-CACg -3'
miRNA:   3'- caaGUGCUGG-GUGGCua----GCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 40737 0.7 0.416092
Target:  5'- -gUCGCcGCCCGCgucgaggCGAUCGCCGUuggCGCg -3'
miRNA:   3'- caAGUGcUGGGUG-------GCUAGCGGCA---GUG- -5'
28000 5' -55.7 NC_005887.1 + 40404 1.1 0.000612
Target:  5'- gGUUCACGACCCACCGAUCGCCGUCACg -3'
miRNA:   3'- -CAAGUGCUGGGUGGCUAGCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 39856 0.67 0.561535
Target:  5'- --gCACGAgCagGCCGGgcUCGCCGUCGa -3'
miRNA:   3'- caaGUGCUgGg-UGGCU--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 39778 0.69 0.436353
Target:  5'- -gUCGCGGCgCUcgcGCCGAUCGUugcgcgcguCGUCACu -3'
miRNA:   3'- caAGUGCUG-GG---UGGCUAGCG---------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 39453 0.67 0.561535
Target:  5'- cGUUCGCGG-CgGCCGAcgugucCGUCGUCGCc -3'
miRNA:   3'- -CAAGUGCUgGgUGGCUa-----GCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 37747 0.69 0.466255
Target:  5'- aGUUcCACGAgCCCGCCcaacUUGCCGUCGu -3'
miRNA:   3'- -CAA-GUGCU-GGGUGGcu--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 37666 0.66 0.639077
Target:  5'- --gCGCG-CCCAUCaGAcccUCGCCGUCuGCg -3'
miRNA:   3'- caaGUGCuGGGUGG-CU---AGCGGCAG-UG- -5'
28000 5' -55.7 NC_005887.1 + 37567 0.67 0.583529
Target:  5'- --gCACGGCCuCGCCGGcUGgCGUCAg -3'
miRNA:   3'- caaGUGCUGG-GUGGCUaGCgGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 36530 0.78 0.118212
Target:  5'- cUUCGCGACCCGCgccgacuCGAUCGCCGccgucuggucauUCACg -3'
miRNA:   3'- cAAGUGCUGGGUG-------GCUAGCGGC------------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 36348 0.66 0.635736
Target:  5'- -cUCAgCGACgCACCGAUCuGCgaaaacaucuugauCGUCGCu -3'
miRNA:   3'- caAGU-GCUGgGUGGCUAG-CG--------------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 35079 0.67 0.550621
Target:  5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3'
miRNA:   3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 34951 0.66 0.650207
Target:  5'- ---uGCGACCgUGgCGAUCGUCGUCGg -3'
miRNA:   3'- caagUGCUGG-GUgGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 34870 0.67 0.539773
Target:  5'- -aUCGCGGCCU--CGAUCGCCuuGUCGu -3'
miRNA:   3'- caAGUGCUGGGugGCUAGCGG--CAGUg -5'
28000 5' -55.7 NC_005887.1 + 34743 0.67 0.549533
Target:  5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3'
miRNA:   3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5'
28000 5' -55.7 NC_005887.1 + 34469 0.67 0.583529
Target:  5'- cGUUCgcGCGGCUCGcgcCCGAgaaGCUGUCGCc -3'
miRNA:   3'- -CAAG--UGCUGGGU---GGCUag-CGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 33302 0.67 0.550621
Target:  5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3'
miRNA:   3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 33266 0.66 0.62794
Target:  5'- -cUCGCGAaacuucguCCCGCCGca-GCCGgcgCACu -3'
miRNA:   3'- caAGUGCU--------GGGUGGCuagCGGCa--GUG- -5'
28000 5' -55.7 NC_005887.1 + 32726 0.74 0.223663
Target:  5'- -aUCGCGAgCCACCGGUCGCgCaUCAg -3'
miRNA:   3'- caAGUGCUgGGUGGCUAGCG-GcAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.