miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 32028 0.66 0.521021
Target:  5'- uCGAUC-UCGGaUGUGCgGGGCaCCGAc- -3'
miRNA:   3'- -GCUAGuAGUC-GCGCGgUCCG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 14993 0.66 0.521021
Target:  5'- cCGcgCAggccgcaGGCGUGCC--GCCCGAGCu -3'
miRNA:   3'- -GCuaGUag-----UCGCGCGGucCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 1955 0.66 0.510443
Target:  5'- ---aCGUCGGcCGUGCCGGGCaucaCGAu- -3'
miRNA:   3'- gcuaGUAGUC-GCGCGGUCCGg---GCUug -5'
28004 5' -57.7 NC_005887.1 + 26902 0.66 0.499955
Target:  5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3'
miRNA:   3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17799 0.66 0.499955
Target:  5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3'
miRNA:   3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 35334 0.66 0.489564
Target:  5'- gCGcgCcgCGGCG-GCC-GGCCaCGAGCu -3'
miRNA:   3'- -GCuaGuaGUCGCgCGGuCCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18369 0.66 0.489564
Target:  5'- cCGcgUAgaCGGCGCGCCGGcGCUcgCGAACc -3'
miRNA:   3'- -GCuaGUa-GUCGCGCGGUC-CGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 24419 0.66 0.489564
Target:  5'- aCGAgcUCGUUcGUGCGCacgCAGGUCgCGAGCa -3'
miRNA:   3'- -GCU--AGUAGuCGCGCG---GUCCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 30202 0.66 0.489564
Target:  5'- gCGAUCGUCaccaaucuGGCGCGCgAcggcGGCCUGcuCg -3'
miRNA:   3'- -GCUAGUAG--------UCGCGCGgU----CCGGGCuuG- -5'
28004 5' -57.7 NC_005887.1 + 14690 0.66 0.479275
Target:  5'- aCGAUCGggcUCGuCGCGgCGGGCgggCCGGGCg -3'
miRNA:   3'- -GCUAGU---AGUcGCGCgGUCCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 37198 0.66 0.479275
Target:  5'- aGcAUCAgCGGCGCGCCgacgucGGGCagcgcggucaugCCGAGCu -3'
miRNA:   3'- gC-UAGUaGUCGCGCGG------UCCG------------GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38234 0.66 0.479275
Target:  5'- uGAUCGUCugccGCGUGUCcuGCgCGAACu -3'
miRNA:   3'- gCUAGUAGu---CGCGCGGucCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 16153 0.66 0.479275
Target:  5'- ---cCAcCGGCGCGCCgAGuGCgCGAGCg -3'
miRNA:   3'- gcuaGUaGUCGCGCGG-UC-CGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 2487 0.66 0.469093
Target:  5'- gGAUCAUCgacGGCGaGCCcGGCCUGcuCg -3'
miRNA:   3'- gCUAGUAG---UCGCgCGGuCCGGGCuuG- -5'
28004 5' -57.7 NC_005887.1 + 27252 0.66 0.469093
Target:  5'- ---gCAUC-GCGCGCC-GGCCCGc-- -3'
miRNA:   3'- gcuaGUAGuCGCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 27132 0.67 0.459024
Target:  5'- uCGAcUCGUCGGCGaucacgcgGCCGaacGGCCaCGGGCg -3'
miRNA:   3'- -GCU-AGUAGUCGCg-------CGGU---CCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 14996 0.67 0.458023
Target:  5'- cCGAcgcUCGUCuGCGCGCCGcugcgcguGGCgcagucgacguggCCGGACg -3'
miRNA:   3'- -GCU---AGUAGuCGCGCGGU--------CCG-------------GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 1703 0.67 0.44907
Target:  5'- cCGGUgAUCGGCGCGCgcucguCAGuGCCUGucuuGCc -3'
miRNA:   3'- -GCUAgUAGUCGCGCG------GUC-CGGGCu---UG- -5'
28004 5' -57.7 NC_005887.1 + 3786 0.67 0.44907
Target:  5'- aGAUCAUCGGUGUugucaccgGCCAGuggcGCCCGc-- -3'
miRNA:   3'- gCUAGUAGUCGCG--------CGGUC----CGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 4009 0.67 0.44907
Target:  5'- uCGAccugCGUucCGGCGCGCUGaauugggguGGCCUGAACg -3'
miRNA:   3'- -GCUa---GUA--GUCGCGCGGU---------CCGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.