miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 18323 0.67 0.42391
Target:  5'- cGCGGCacugggGGCGcauCGGCGACauGCGACGu -3'
miRNA:   3'- cCGCCG------CUGCcu-GCCGCUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 30948 0.67 0.42391
Target:  5'- cGGCGGUGAUGu-CGGCGccCGCGuACGu -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGCu-GUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 15549 0.67 0.42391
Target:  5'- --gGGCGACGacuCGGCGcGCGCGACc- -3'
miRNA:   3'- ccgCCGCUGCcu-GCCGC-UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 29770 0.67 0.421153
Target:  5'- cGGCcgGGuCGGCGGAcaccaugcgcaugcCGGCGGCcguCGACGc -3'
miRNA:   3'- -CCG--CC-GCUGCCU--------------GCCGCUGu--GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 2890 0.67 0.414762
Target:  5'- aGGCGaCGACGGAcacguCGGCcGcCGCGaACGAc -3'
miRNA:   3'- -CCGCcGCUGCCU-----GCCG-CuGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 24604 0.67 0.414762
Target:  5'- cGCGGCGAUGaucuuGCGGCcGcACGCGugGu -3'
miRNA:   3'- cCGCCGCUGCc----UGCCG-C-UGUGCugCu -5'
28009 5' -59.7 NC_005887.1 + 17668 0.67 0.414762
Target:  5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3'
miRNA:   3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 34702 0.67 0.405736
Target:  5'- gGGCGGCcgucgucGCGcuuGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -CCGCCGc------UGCc--UGCCGCuGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13953 0.67 0.405736
Target:  5'- cGGCuGCGACGuGC-GCGugACGACa- -3'
miRNA:   3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 27356 0.67 0.396835
Target:  5'- gGGCGGCacgccuGCGGccugcGCGGCcuGCGCGGCGu -3'
miRNA:   3'- -CCGCCGc-----UGCC-----UGCCGc-UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 13780 0.67 0.396835
Target:  5'- cGCGuccGCGcaGCGGGCGGCGACGCcuACa- -3'
miRNA:   3'- cCGC---CGC--UGCCUGCCGCUGUGc-UGcu -5'
28009 5' -59.7 NC_005887.1 + 11932 0.67 0.396835
Target:  5'- cGuCGGCcuGAUGGugGGCGAacuCGGCGu -3'
miRNA:   3'- cC-GCCG--CUGCCugCCGCUgu-GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 4247 0.67 0.38806
Target:  5'- uGCucGCGAUGGAgcaCGGCaaGCGCGACGAg -3'
miRNA:   3'- cCGc-CGCUGCCU---GCCGc-UGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 2168 0.68 0.382857
Target:  5'- cGGCGGCGAuucccuucgugccguCGcGcagcucacacGCGGCGAgCGCGGCGc -3'
miRNA:   3'- -CCGCCGCU---------------GC-C----------UGCCGCU-GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 32142 0.68 0.379414
Target:  5'- -cCGGCG-CGGGCauCGACGCGACGc -3'
miRNA:   3'- ccGCCGCuGCCUGccGCUGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26208 0.68 0.379414
Target:  5'- gGGCGGCGGUGGcCGGCcugcagcuGGCGC-ACGGg -3'
miRNA:   3'- -CCGCCGCUGCCuGCCG--------CUGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 10098 0.68 0.378556
Target:  5'- gGGCGGCccgcgccGACGGccagcugauCGGCuGCACGuACGAc -3'
miRNA:   3'- -CCGCCG-------CUGCCu--------GCCGcUGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 12141 0.68 0.370898
Target:  5'- aGGCcGCGACGcGGCguGGCuGGC-CGGCGAg -3'
miRNA:   3'- -CCGcCGCUGC-CUG--CCG-CUGuGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4625 0.68 0.362513
Target:  5'- cGCGGCGcCGGugGccgcCGGCGCGAUc- -3'
miRNA:   3'- cCGCCGCuGCCugCc---GCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 14659 0.68 0.354261
Target:  5'- cGCGGCGA-GGuACGGCacguGAUGCaGACGAu -3'
miRNA:   3'- cCGCCGCUgCC-UGCCG----CUGUG-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.