miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 30948 0.67 0.42391
Target:  5'- cGGCGGUGAUGu-CGGCGccCGCGuACGu -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGCu-GUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 29770 0.67 0.421153
Target:  5'- cGGCcgGGuCGGCGGAcaccaugcgcaugcCGGCGGCcguCGACGc -3'
miRNA:   3'- -CCG--CC-GCUGCCU--------------GCCGCUGu--GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 28332 0.74 0.150626
Target:  5'- cGGCGGCGcgccggcgguuGCGGA-GGCG-CGCGGCGc -3'
miRNA:   3'- -CCGCCGC-----------UGCCUgCCGCuGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27517 0.68 0.353443
Target:  5'- uGGCGugaauacGCGGCGGGCGGUcAUggGCGGCGc -3'
miRNA:   3'- -CCGC-------CGCUGCCUGCCGcUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27405 0.66 0.471384
Target:  5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3'
miRNA:   3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27356 0.67 0.396835
Target:  5'- gGGCGGCacgccuGCGGccugcGCGGCcuGCGCGGCGu -3'
miRNA:   3'- -CCGCCGc-----UGCC-----UGCCGc-UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26651 0.75 0.118183
Target:  5'- cGcCGGCGGCGGAaucaucCGGCcGCGCGGCGGu -3'
miRNA:   3'- cC-GCCGCUGCCU------GCCGcUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26401 0.67 0.433178
Target:  5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3'
miRNA:   3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26352 0.66 0.45206
Target:  5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3'
miRNA:   3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 26208 0.68 0.379414
Target:  5'- gGGCGGCGGUGGcCGGCcugcagcuGGCGC-ACGGg -3'
miRNA:   3'- -CCGCCGCUGCCuGCCG--------CUGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26011 0.68 0.346142
Target:  5'- gGGCGGCGuCGGG-GGCGAgGCuacCGGg -3'
miRNA:   3'- -CCGCCGCuGCCUgCCGCUgUGcu-GCU- -5'
28009 5' -59.7 NC_005887.1 + 25832 0.75 0.128201
Target:  5'- -uCGGCGcCGG-CGGCGACGCGAuCGGc -3'
miRNA:   3'- ccGCCGCuGCCuGCCGCUGUGCU-GCU- -5'
28009 5' -59.7 NC_005887.1 + 25496 0.78 0.076053
Target:  5'- cGGCGGCu-CGGACGaUGGCGCGGCGGg -3'
miRNA:   3'- -CCGCCGcuGCCUGCcGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 25274 0.67 0.433178
Target:  5'- uGCGaGCGGuCGaGCaGCGGCAUGACGGc -3'
miRNA:   3'- cCGC-CGCU-GCcUGcCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 24604 0.67 0.414762
Target:  5'- cGCGGCGAUGaucuuGCGGCcGcACGCGugGu -3'
miRNA:   3'- cCGCCGCUGCc----UGCCG-C-UGUGCugCu -5'
28009 5' -59.7 NC_005887.1 + 23245 0.76 0.100301
Target:  5'- aGCGGCGGCGGuCGGCGcGCAaaaGGCGc -3'
miRNA:   3'- cCGCCGCUGCCuGCCGC-UGUg--CUGCu -5'
28009 5' -59.7 NC_005887.1 + 23129 0.79 0.060804
Target:  5'- uGGCGGUGAgGuGACGGCGugACGAUc- -3'
miRNA:   3'- -CCGCCGCUgC-CUGCCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 21230 0.66 0.478246
Target:  5'- cGUGGCGuuGGcgagcaccguguuuGCGGCGAcCGCGcCGAu -3'
miRNA:   3'- cCGCCGCugCC--------------UGCCGCU-GUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 21037 0.69 0.299538
Target:  5'- cGGuCGGCG-CGGugGGCGugcccgugaauguGgGCGACGc -3'
miRNA:   3'- -CC-GCCGCuGCCugCCGC-------------UgUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 19809 0.69 0.315014
Target:  5'- uGGC-GCGAcCGGAaaCGGgGGCGuCGACGAc -3'
miRNA:   3'- -CCGcCGCU-GCCU--GCCgCUGU-GCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.