Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 14076 | 0.66 | 0.743389 |
|
Target: 5'- gCGCUcGgcgUGCCGAUgaugcUCGUCAGUGg -3' miRNA: 3'- aGCGAaCa--GCGGCUAga---AGCAGUCGC- -5' |
|||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 36294 | 0.66 | 0.764588 |
|
Target: 5'- cUCGUccgGUUgGCCGAUCUgCG-CGGCGg -3' miRNA: 3'- -AGCGaa-CAG-CGGCUAGAaGCaGUCGC- -5' |
|||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 24019 | 0.66 | 0.774978 |
|
Target: 5'- gUCGCaUGUCGCCGAUg--CGccccCAGUGc -3' miRNA: 3'- -AGCGaACAGCGGCUAgaaGCa---GUCGC- -5' |
|||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 36384 | 0.66 | 0.774978 |
|
Target: 5'- gUCGCUgcaUCGCCGGacg-CGcCAGCGa -3' miRNA: 3'- -AGCGAac-AGCGGCUagaaGCaGUCGC- -5' |
|||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 33516 | 0.66 | 0.785212 |
|
Target: 5'- gCGCgaucUUGUCGgCGAUCacCGUgAGCGc -3' miRNA: 3'- aGCG----AACAGCgGCUAGaaGCAgUCGC- -5' |
|||||||
| 28010 | 5' | -53.3 | NC_005887.1 | + | 15582 | 0.66 | 0.785212 |
|
Target: 5'- uUCGCUgaUCGCCGAagCUgagaCG-CAGCGc -3' miRNA: 3'- -AGCGAacAGCGGCUa-GAa---GCaGUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home