Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 41269 | 0.7 | 0.166042 |
Target: 5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3' miRNA: 3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 29941 | 0.7 | 0.166042 |
Target: 5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3' miRNA: 3'- cauUGCCGCGGCcACGGGcGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 23948 | 0.69 | 0.177901 |
Target: 5'- -cGACGGCGCCGcGgcguagGCCaucggguucgcgaGCGCcGGCg -3' miRNA: 3'- caUUGCCGCGGC-Ca-----CGGg------------CGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 20799 | 0.69 | 0.207091 |
Target: 5'- cGUAAUuGCGCCGGUcGCCUGCaGCgucgugaauuucccGGCa -3' miRNA: 3'- -CAUUGcCGCGGCCA-CGGGCG-CGa-------------CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 32502 | 0.69 | 0.189509 |
Target: 5'- --uGCGGCGCgCGGcguucagguUGgCCGCGCUgaccGGCu -3' miRNA: 3'- cauUGCCGCG-GCC---------ACgGGCGCGA----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 39904 | 0.69 | 0.194539 |
Target: 5'- -cGACGGCGCCguagcgcgcgaGGUGUCauucgucgGCGCgGGCu -3' miRNA: 3'- caUUGCCGCGG-----------CCACGGg-------CGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24382 | 0.69 | 0.194539 |
Target: 5'- --uGCGGCcgauGCCGGcgaGCCCGCGCaucaUGuGCg -3' miRNA: 3'- cauUGCCG----CGGCCa--CGGGCGCG----AC-CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 37447 | 0.69 | 0.194539 |
Target: 5'- --cGCGGCGCU--UGCCUGCGC-GGUu -3' miRNA: 3'- cauUGCCGCGGccACGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 39530 | 0.69 | 0.189509 |
Target: 5'- -cAACuGGCGCCGGcucUGUaccccaauCCGCGCgacgGGCu -3' miRNA: 3'- caUUG-CCGCGGCC---ACG--------GGCGCGa---CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 23278 | 0.69 | 0.194539 |
Target: 5'- cGUGGCGGuUGCCGcaGCCCGCGCcGa- -3' miRNA: 3'- -CAUUGCC-GCGGCcaCGGGCGCGaCcg -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10208 | 0.68 | 0.233106 |
Target: 5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3' miRNA: 3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 27702 | 0.68 | 0.233106 |
Target: 5'- ---cCGGCGaCGGgcaGCaCCGCGCcGGCu -3' miRNA: 3'- cauuGCCGCgGCCa--CG-GGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 21273 | 0.68 | 0.233106 |
Target: 5'- --cGCGGCGgCGGcGUaugCGCuGCUGGCg -3' miRNA: 3'- cauUGCCGCgGCCaCGg--GCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 14710 | 0.68 | 0.233106 |
Target: 5'- -gGGCGG-GCCGGgcgcgGCgaUCGCGCaGGCg -3' miRNA: 3'- caUUGCCgCGGCCa----CG--GGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24206 | 0.68 | 0.227226 |
Target: 5'- cGgcACGaCGUCGGcgGCCCGCGCUucgccGGUu -3' miRNA: 3'- -CauUGCcGCGGCCa-CGGGCGCGA-----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28836 | 0.68 | 0.239114 |
Target: 5'- cGUGGC-GCGCa--UGCCCGUGCcGGCg -3' miRNA: 3'- -CAUUGcCGCGgccACGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 41484 | 0.68 | 0.210336 |
Target: 5'- -cGGCGGCG-CGG-GCCaCGCGUccacgGGCa -3' miRNA: 3'- caUUGCCGCgGCCaCGG-GCGCGa----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 11098 | 0.68 | 0.210336 |
Target: 5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3' miRNA: 3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26060 | 0.67 | 0.24463 |
Target: 5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3' miRNA: 3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10999 | 0.67 | 0.257914 |
Target: 5'- -gGAUGGCG-UGGUGCUCGgGUgcGGCg -3' miRNA: 3'- caUUGCCGCgGCCACGGGCgCGa-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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