miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 42128 0.66 0.517213
Target:  5'- uGUGGcgauccugGCGCGCAUucgcagAGCAGCgGgGCGa -3'
miRNA:   3'- gCACC--------UGCGCGUG------UUGUCGaCgCGCa -5'
28017 5' -57.5 NC_005887.1 + 41962 0.68 0.416404
Target:  5'- gCGUGGuGCGUGCGCGGCGcGCU-CGCc- -3'
miRNA:   3'- -GCACC-UGCGCGUGUUGU-CGAcGCGca -5'
28017 5' -57.5 NC_005887.1 + 41920 0.67 0.445428
Target:  5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3'
miRNA:   3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41816 0.66 0.496184
Target:  5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3'
miRNA:   3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5'
28017 5' -57.5 NC_005887.1 + 41442 0.69 0.344966
Target:  5'- uCGUGGGCuauGCGCugcuCGGCAcGCcGCGCGa -3'
miRNA:   3'- -GCACCUG---CGCGu---GUUGU-CGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41346 0.75 0.144728
Target:  5'- gGUGuacagcGCGCGCACGGCGGCcggcaauuUGCGCGUg -3'
miRNA:   3'- gCACc-----UGCGCGUGUUGUCG--------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 40689 0.66 0.506652
Target:  5'- -cUGG-CGCGCGCGcACGGCUG-GCa- -3'
miRNA:   3'- gcACCuGCGCGUGU-UGUCGACgCGca -5'
28017 5' -57.5 NC_005887.1 + 40123 0.68 0.379561
Target:  5'- --aGGACGCcUACAGCGugcggugcgcGCUGCGCGc -3'
miRNA:   3'- gcaCCUGCGcGUGUUGU----------CGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 39901 0.69 0.344966
Target:  5'- gGUGGACcagcauacgguGCGCGCAGaucgAGCcggGCGCGUc -3'
miRNA:   3'- gCACCUG-----------CGCGUGUUg---UCGa--CGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 39174 0.67 0.435627
Target:  5'- --cGGACGCGCGCGagaucccgaACAcgucggccaacuGCUGCaGCGUc -3'
miRNA:   3'- gcaCCUGCGCGUGU---------UGU------------CGACG-CGCA- -5'
28017 5' -57.5 NC_005887.1 + 39165 0.66 0.517213
Target:  5'- uCGcUGucCGgGCGCGGCAGCUGCcCGa -3'
miRNA:   3'- -GC-ACcuGCgCGUGUUGUCGACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 38537 0.69 0.353399
Target:  5'- gGUGGGCGCuuACAcCAGCggGCGCc- -3'
miRNA:   3'- gCACCUGCGcgUGUuGUCGa-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 37440 0.66 0.527861
Target:  5'- aGUGGAgCGCgGCGCuu--GcCUGCGCGg -3'
miRNA:   3'- gCACCU-GCG-CGUGuuguC-GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 37097 0.66 0.496184
Target:  5'- --cGGGCGaGCACAGCcucGGCgaucGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGUUG---UCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 36899 0.72 0.212188
Target:  5'- gGUGGAUGCgGCAgGAgugcCAGCggGCGCGUg -3'
miRNA:   3'- gCACCUGCG-CGUgUU----GUCGa-CGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 35200 0.66 0.485815
Target:  5'- aCGgcgGGGCGauucguuGCGCAGCAGCuugucggccUGCGUGg -3'
miRNA:   3'- -GCa--CCUGCg------CGUGUUGUCG---------ACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 34915 0.66 0.524658
Target:  5'- ---cGACGCGCACGccagcccaaacgagGCGGCgGCGgGUg -3'
miRNA:   3'- gcacCUGCGCGUGU--------------UGUCGaCGCgCA- -5'
28017 5' -57.5 NC_005887.1 + 34251 0.68 0.397709
Target:  5'- ---cGGCGaGCGCGGCgAGCUGCGCGc -3'
miRNA:   3'- gcacCUGCgCGUGUUG-UCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 32753 0.66 0.474529
Target:  5'- gCGUGcgcgccGGCGCGCGCcauGCAGCcggcucgUGCGCa- -3'
miRNA:   3'- -GCAC------CUGCGCGUGu--UGUCG-------ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 32522 0.68 0.379561
Target:  5'- -uUGGcCGCGCugAcCGGCUGCGaCGc -3'
miRNA:   3'- gcACCuGCGCGugUuGUCGACGC-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.