miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 26062 0.67 0.435627
Target:  5'- gGUGGugcuccuggucaGCGCGU-CAGCGGCccGCGCGg -3'
miRNA:   3'- gCACC------------UGCGCGuGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 38537 0.69 0.353399
Target:  5'- gGUGGGCGCuuACAcCAGCggGCGCc- -3'
miRNA:   3'- gCACCUGCGcgUGUuGUCGa-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 29194 0.69 0.361976
Target:  5'- --aGGAUcUGCGCGGCcuuaAGCUGCGCGa -3'
miRNA:   3'- gcaCCUGcGCGUGUUG----UCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 5415 0.69 0.361976
Target:  5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3'
miRNA:   3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 40123 0.68 0.379561
Target:  5'- --aGGACGCcUACAGCGugcggugcgcGCUGCGCGc -3'
miRNA:   3'- gcaCCUGCGcGUGUUGU----------CGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17174 0.68 0.406989
Target:  5'- gCGUGGGaGCGCGCGaacGCGGCcGCacGCGg -3'
miRNA:   3'- -GCACCUgCGCGUGU---UGUCGaCG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 20146 0.68 0.416404
Target:  5'- uGUgGGAUGCGCAaacgucaAGCGGCgGCGCc- -3'
miRNA:   3'- gCA-CCUGCGCGUg------UUGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 41962 0.68 0.416404
Target:  5'- gCGUGGuGCGUGCGCGGCGcGCU-CGCc- -3'
miRNA:   3'- -GCACC-UGCGCGUGUUGU-CGAcGCGca -5'
28017 5' -57.5 NC_005887.1 + 12465 0.67 0.425951
Target:  5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3'
miRNA:   3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 1489 0.69 0.344966
Target:  5'- gCGUGcGGCGCucGCGCGgcGCGGCcGUGCGg -3'
miRNA:   3'- -GCAC-CUGCG--CGUGU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41442 0.69 0.344966
Target:  5'- uCGUGGGCuauGCGCugcuCGGCAcGCcGCGCGa -3'
miRNA:   3'- -GCACCUG---CGCGu---GUUGU-CGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 39901 0.69 0.344966
Target:  5'- gGUGGACcagcauacgguGCGCGCAGaucgAGCcggGCGCGUc -3'
miRNA:   3'- gCACCUG-----------CGCGUGUUg---UCGa--CGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 26431 0.75 0.129393
Target:  5'- gCG-GGaACGCGCGCuGCAGCcGCGCGa -3'
miRNA:   3'- -GCaCC-UGCGCGUGuUGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14850 0.74 0.170851
Target:  5'- uCGcGGGCGUGCACAccGCAGCaacaGCGCGc -3'
miRNA:   3'- -GCaCCUGCGCGUGU--UGUCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 2659 0.72 0.206584
Target:  5'- gGUGGGCGCGgGCGAgcacaAGCaccuggUGCGCGUg -3'
miRNA:   3'- gCACCUGCGCgUGUUg----UCG------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 6043 0.72 0.223787
Target:  5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3'
miRNA:   3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 22951 0.71 0.242191
Target:  5'- uCGcGGACcgauaCGCucuGCGGCAGCUGCGCGa -3'
miRNA:   3'- -GCaCCUGc----GCG---UGUUGUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 10353 0.71 0.248601
Target:  5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3'
miRNA:   3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 18119 0.7 0.297438
Target:  5'- --cGGACGCGCuguacGCAAcCGGCgaaGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG-----UGUU-GUCGa--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26334 0.69 0.344966
Target:  5'- cCGUGGcCgGCGCugGcCGGgUGCGCGa -3'
miRNA:   3'- -GCACCuG-CGCGugUuGUCgACGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.