Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 17891 | 0.66 | 0.526792 |
Target: 5'- --cGGcCGCGC-CAACGGCcugaugcUGCGUGUc -3' miRNA: 3'- gcaCCuGCGCGuGUUGUCG-------ACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 32522 | 0.68 | 0.379561 |
Target: 5'- -uUGGcCGCGCugAcCGGCUGCGaCGc -3' miRNA: 3'- gcACCuGCGCGugUuGUCGACGC-GCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 6945 | 0.69 | 0.365447 |
Target: 5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3' miRNA: 3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 31398 | 1.08 | 0.000507 |
Target: 5'- gCGUGGACGCGCACAACAGCUGCGCGUa -3' miRNA: 3'- -GCACCUGCGCGUGUUGUCGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 28160 | 0.66 | 0.517213 |
Target: 5'- --aGGcCGCGCcCGACAGC-GCGUGc -3' miRNA: 3'- gcaCCuGCGCGuGUUGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 11190 | 0.66 | 0.517213 |
Target: 5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3' miRNA: 3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 41816 | 0.66 | 0.496184 |
Target: 5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3' miRNA: 3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 14103 | 0.66 | 0.485815 |
Target: 5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3' miRNA: 3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 21047 | 0.67 | 0.469443 |
Target: 5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3' miRNA: 3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 34251 | 0.68 | 0.397709 |
Target: 5'- ---cGGCGaGCGCGGCgAGCUGCGCGc -3' miRNA: 3'- gcacCUGCgCGUGUUG-UCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 41920 | 0.67 | 0.445428 |
Target: 5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3' miRNA: 3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 19537 | 0.66 | 0.472491 |
Target: 5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3' miRNA: 3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 34915 | 0.66 | 0.524658 |
Target: 5'- ---cGACGCGCACGccagcccaaacgagGCGGCgGCGgGUg -3' miRNA: 3'- gcacCUGCGCGUGU--------------UGUCGaCGCgCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 13943 | 0.67 | 0.435627 |
Target: 5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3' miRNA: 3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 18949 | 0.66 | 0.517213 |
Target: 5'- ---cGACGCGCuGCuGCGGCUGCcaGCGg -3' miRNA: 3'- gcacCUGCGCG-UGuUGUCGACG--CGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 28451 | 0.66 | 0.485815 |
Target: 5'- aCGUGccacgaaugccGACGCGCACGAgccggUAGCU-CGCGa -3' miRNA: 3'- -GCAC-----------CUGCGCGUGUU-----GUCGAcGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2426 | 0.67 | 0.425951 |
Target: 5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3' miRNA: 3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 26229 | 0.68 | 0.370697 |
Target: 5'- gGUGGuuGCGCGCGGC-GCaGCGCc- -3' miRNA: 3'- gCACCugCGCGUGUUGuCGaCGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 39165 | 0.66 | 0.517213 |
Target: 5'- uCGcUGucCGgGCGCGGCAGCUGCcCGa -3' miRNA: 3'- -GC-ACcuGCgCGUGUUGUCGACGcGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 15909 | 0.66 | 0.517213 |
Target: 5'- aGUcGGAucuCGCGCgGCuGCAGC-GCGCGUu -3' miRNA: 3'- gCA-CCU---GCGCG-UGuUGUCGaCGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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