miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 34251 0.68 0.397709
Target:  5'- ---cGGCGaGCGCGGCgAGCUGCGCGc -3'
miRNA:   3'- gcacCUGCgCGUGUUG-UCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 21047 0.67 0.469443
Target:  5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3'
miRNA:   3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 31398 1.08 0.000507
Target:  5'- gCGUGGACGCGCACAACAGCUGCGCGUa -3'
miRNA:   3'- -GCACCUGCGCGUGUUGUCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 15102 0.71 0.268671
Target:  5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3'
miRNA:   3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 6945 0.69 0.365447
Target:  5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3'
miRNA:   3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 19537 0.66 0.472491
Target:  5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3'
miRNA:   3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5'
28017 5' -57.5 NC_005887.1 + 7849 0.7 0.300442
Target:  5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3'
miRNA:   3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 28451 0.66 0.485815
Target:  5'- aCGUGccacgaaugccGACGCGCACGAgccggUAGCU-CGCGa -3'
miRNA:   3'- -GCAC-----------CUGCGCGUGUU-----GUCGAcGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14103 0.66 0.485815
Target:  5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3'
miRNA:   3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26414 0.69 0.358528
Target:  5'- gCGUGGccgGCGCaucgauuccggcccGCGCGGaacgcaggucggcCAGCUGCGCGUc -3'
miRNA:   3'- -GCACC---UGCG--------------CGUGUU-------------GUCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 36899 0.72 0.212188
Target:  5'- gGUGGAUGCgGCAgGAgugcCAGCggGCGCGUg -3'
miRNA:   3'- gCACCUGCG-CGUgUU----GUCGa-CGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 2426 0.67 0.425951
Target:  5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3'
miRNA:   3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 4132 0.67 0.455352
Target:  5'- --cGGccACGCGCAa---GGCUGCGCGc -3'
miRNA:   3'- gcaCC--UGCGCGUguugUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 27355 0.7 0.312694
Target:  5'- --cGGGCG-GCACGccuGCGGcCUGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGU---UGUC-GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 12620 0.71 0.261164
Target:  5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3'
miRNA:   3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 5415 0.69 0.361976
Target:  5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3'
miRNA:   3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 29194 0.69 0.361976
Target:  5'- --aGGAUcUGCGCGGCcuuaAGCUGCGCGa -3'
miRNA:   3'- gcaCCUGcGCGUGUUG----UCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 40689 0.66 0.506652
Target:  5'- -cUGG-CGCGCGCGcACGGCUG-GCa- -3'
miRNA:   3'- gcACCuGCGCGUGU-UGUCGACgCGca -5'
28017 5' -57.5 NC_005887.1 + 4662 0.66 0.496184
Target:  5'- --aGcGACGCGCA-GACcGCUGCGCa- -3'
miRNA:   3'- gcaC-CUGCGCGUgUUGuCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 37097 0.66 0.496184
Target:  5'- --cGGGCGaGCACAGCcucGGCgaucGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGUUG---UCGa---CGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.