miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 18960 0.66 0.725419
Target:  5'- uGCgGCUGCCAGCGGCa-------GCGCg -3'
miRNA:   3'- -CG-CGACGGUCGUCGcuacuucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 30568 0.66 0.725419
Target:  5'- aCGCcGCCgAGCAGCGA---GG-ACGCc -3'
miRNA:   3'- cGCGaCGG-UCGUCGCUacuUCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 14531 0.66 0.725419
Target:  5'- gGCGCggccGUCGGCGGCGcgucgaucggcAUGucGcGCGCg -3'
miRNA:   3'- -CGCGa---CGGUCGUCGC-----------UACuuCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 34256 0.66 0.714386
Target:  5'- aGCGCgGCgAGCuGCGcgcgcgcuuucGUGAAcgaccagacGUGCGCa -3'
miRNA:   3'- -CGCGaCGgUCGuCGC-----------UACUU---------CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 2187 0.66 0.714386
Target:  5'- ----cGCCGGCcGCGGUGAucGGgcaGCGCa -3'
miRNA:   3'- cgcgaCGGUCGuCGCUACU--UCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 20197 0.66 0.703267
Target:  5'- uGCGC-GUCAGCccuucGcCGAUGAAGccgaGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGu----C-GCUACUUCa---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 29791 0.66 0.692073
Target:  5'- uGCGCaUGCCGGCGGCc--GucG-ACGCc -3'
miRNA:   3'- -CGCG-ACGGUCGUCGcuaCuuCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 34918 0.66 0.692073
Target:  5'- cGCGCacGCCAGCccaaacgaGGCGgcGGcgGGUGCGa -3'
miRNA:   3'- -CGCGa-CGGUCG--------UCGCuaCU--UCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 37501 0.66 0.680818
Target:  5'- uGCGCUGCaCGGgGGaCG-UGAucacggucgacuGGUugGCg -3'
miRNA:   3'- -CGCGACG-GUCgUC-GCuACU------------UCAugCG- -5'
28019 3' -53.8 NC_005887.1 + 41945 0.66 0.679689
Target:  5'- -aGCUGcCCGGCGugcucgcGUGGUGc-GUGCGCg -3'
miRNA:   3'- cgCGAC-GGUCGU-------CGCUACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 35910 0.66 0.677431
Target:  5'- cGCGCacuucgaucucgGCCGGCcguccggccacacGGCGAUGAuc-ACGCa -3'
miRNA:   3'- -CGCGa-----------CGGUCG-------------UCGCUACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 6049 0.67 0.67404
Target:  5'- gGUGCUGgUGGCAGCGgcgcggcacucaccaAcGAAGaUGCGCg -3'
miRNA:   3'- -CGCGACgGUCGUCGC---------------UaCUUC-AUGCG- -5'
28019 3' -53.8 NC_005887.1 + 11386 0.67 0.669513
Target:  5'- aGCGCaGCCGG-AGCGcUGgcGgccgGCGCc -3'
miRNA:   3'- -CGCGaCGGUCgUCGCuACuuCa---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 27974 0.67 0.65817
Target:  5'- cGCGC-GCCgAGCGGCGAcucGAacaGGUGCccgGCa -3'
miRNA:   3'- -CGCGaCGG-UCGUCGCUa--CU---UCAUG---CG- -5'
28019 3' -53.8 NC_005887.1 + 37401 0.67 0.65817
Target:  5'- gGCGCUGCgCGGUcGCGAcUGccugcacgccAGGUGCGg -3'
miRNA:   3'- -CGCGACG-GUCGuCGCU-AC----------UUCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 12490 0.67 0.65817
Target:  5'- cGCGCUGaucgauUCAGCGGCGcUGGAuc-CGCa -3'
miRNA:   3'- -CGCGAC------GGUCGUCGCuACUUcauGCG- -5'
28019 3' -53.8 NC_005887.1 + 3185 0.67 0.65817
Target:  5'- gGCaGCUGCCgcgcccGGaCAGCGA-GAAGggcCGCg -3'
miRNA:   3'- -CG-CGACGG------UC-GUCGCUaCUUCau-GCG- -5'
28019 3' -53.8 NC_005887.1 + 13945 0.67 0.65817
Target:  5'- cGCGC-GCuCGGCuGCGAc---GUGCGCg -3'
miRNA:   3'- -CGCGaCG-GUCGuCGCUacuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 40528 0.67 0.635419
Target:  5'- aCGCggcGCgCGGCAGCGAcGAcGGUcugGCGCu -3'
miRNA:   3'- cGCGa--CG-GUCGUCGCUaCU-UCA---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15879 0.67 0.624033
Target:  5'- gGCGCa-CCAGCAGCuc---GGUGCGCu -3'
miRNA:   3'- -CGCGacGGUCGUCGcuacuUCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.