miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 5048 0.67 0.463546
Target:  5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3'
miRNA:   3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 7447 0.67 0.504757
Target:  5'- uGGCGugcgcgucguGAUCGGcAUGCCGUuCgCGAACg -3'
miRNA:   3'- gCCGUu---------CUAGCC-UACGGCGcG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 4794 0.7 0.334278
Target:  5'- cCGGCGAGGccgugcucgCGGAucucgcgcaguucUGCCGCGCC-AACc -3'
miRNA:   3'- -GCCGUUCUa--------GCCU-------------ACGGCGCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 33391 0.71 0.303502
Target:  5'- gCGGCAGGAugaggcucaUCGcGGUGCguagauacCGCGaCCGAGCa -3'
miRNA:   3'- -GCCGUUCU---------AGC-CUACG--------GCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 30274 0.67 0.494299
Target:  5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3'
miRNA:   3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5'
28023 5' -56.8 NC_005887.1 + 32788 0.67 0.493259
Target:  5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3'
miRNA:   3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17275 0.72 0.247298
Target:  5'- gGGCGAGAcgUCGGGcggcGCCGCGCgCGcaAACg -3'
miRNA:   3'- gCCGUUCU--AGCCUa---CGGCGCG-GC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 15651 0.67 0.483941
Target:  5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3'
miRNA:   3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 7124 0.68 0.453519
Target:  5'- aGGCGGGG-CGGcgcUGCgGCGCCGuucAACu -3'
miRNA:   3'- gCCGUUCUaGCCu--ACGgCGCGGC---UUG- -5'
28023 5' -56.8 NC_005887.1 + 27726 0.7 0.346708
Target:  5'- aCGGCGgucaggccguaguagAGA-CGGAagugGCCGaUGCCGAGCg -3'
miRNA:   3'- -GCCGU---------------UCUaGCCUa---CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 10194 0.69 0.369027
Target:  5'- aCGGUuucgucGAGugcGUCGcgucGAUGcCCGCGCCGGACg -3'
miRNA:   3'- -GCCG------UUC---UAGC----CUAC-GGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 35126 0.68 0.433825
Target:  5'- gGGCGcGGAUCGGAauCCGgCGCCacGGACg -3'
miRNA:   3'- gCCGU-UCUAGCCUacGGC-GCGG--CUUG- -5'
28023 5' -56.8 NC_005887.1 + 33953 0.66 0.569258
Target:  5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3'
miRNA:   3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 5845 0.66 0.580235
Target:  5'- gGGCGAag-CGGAgcucaCCGCGCUGAAa -3'
miRNA:   3'- gCCGUUcuaGCCUac---GGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 14993 0.66 0.580235
Target:  5'- cCGcGCAGGccgcaGGcGUGCCGC-CCGAGCu -3'
miRNA:   3'- -GC-CGUUCuag--CC-UACGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 38295 0.68 0.433825
Target:  5'- -cGCAAcGGUCaGGGUGCCGuCGCCGu-- -3'
miRNA:   3'- gcCGUU-CUAG-CCUACGGC-GCGGCuug -5'
28023 5' -56.8 NC_005887.1 + 1493 0.68 0.44361
Target:  5'- gCGGCGcucGcgCGGcgcgGCCGUGCgGAACa -3'
miRNA:   3'- -GCCGUu--CuaGCCua--CGGCGCGgCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40282 0.69 0.386855
Target:  5'- cCGGCAAG-UCGG-UGCCGC-UCGAu- -3'
miRNA:   3'- -GCCGUUCuAGCCuACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 12868 0.69 0.386855
Target:  5'- aGGCAcGAccgUGGcagGUGCCGUGCgCGAGCu -3'
miRNA:   3'- gCCGUuCUa--GCC---UACGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25515 0.69 0.377871
Target:  5'- gCGGCGGGuggCGGcauaaucGUCGcCGCCGAGCg -3'
miRNA:   3'- -GCCGUUCua-GCCua-----CGGC-GCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.