miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 42090 0.69 0.40524
Target:  5'- uCGcGUggGG-CGcGAUGCCGCGUCGAcgaACg -3'
miRNA:   3'- -GC-CGuuCUaGC-CUACGGCGCGGCU---UG- -5'
28023 5' -56.8 NC_005887.1 + 40985 0.69 0.395978
Target:  5'- aCGcGCGGGAcaGGAUGuaGCGCuCGAGCg -3'
miRNA:   3'- -GC-CGUUCUagCCUACggCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40835 0.66 0.565975
Target:  5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3'
miRNA:   3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 40282 0.69 0.386855
Target:  5'- cCGGCAAG-UCGG-UGCCGC-UCGAu- -3'
miRNA:   3'- -GCCGUUCuAGCCuACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 39842 0.67 0.504757
Target:  5'- gCGGCAGuc-CGGGUGCacgaGCagGCCGGGCu -3'
miRNA:   3'- -GCCGUUcuaGCCUACGg---CG--CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 39504 0.73 0.205444
Target:  5'- gCGGCAuugGGAugUCGGGUGCaC-CGCUGAACa -3'
miRNA:   3'- -GCCGU---UCU--AGCCUACG-GcGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 39398 0.69 0.395978
Target:  5'- cCGGCGAGGauggucgCGGcgGUGCCGCGgCGcuuGCg -3'
miRNA:   3'- -GCCGUUCUa------GCC--UACGGCGCgGCu--UG- -5'
28023 5' -56.8 NC_005887.1 + 38295 0.68 0.433825
Target:  5'- -cGCAAcGGUCaGGGUGCCGuCGCCGu-- -3'
miRNA:   3'- gcCGUU-CUAG-CCUACGGC-GCGGCuug -5'
28023 5' -56.8 NC_005887.1 + 37850 0.71 0.274249
Target:  5'- uCGGCGAGcagacgCGcGAUGCgCGCGCCGuucgGCa -3'
miRNA:   3'- -GCCGUUCua----GC-CUACG-GCGCGGCu---UG- -5'
28023 5' -56.8 NC_005887.1 + 37730 0.66 0.580235
Target:  5'- cCGGCGGccacCGGc-GCCGCGgCGAGCa -3'
miRNA:   3'- -GCCGUUcua-GCCuaCGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 36906 0.73 0.228554
Target:  5'- gCGGCAGGAgugccagCGGGcgcgugGUCGCGCCGGucGCu -3'
miRNA:   3'- -GCCGUUCUa------GCCUa-----CGGCGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 35827 0.66 0.558333
Target:  5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3'
miRNA:   3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5'
28023 5' -56.8 NC_005887.1 + 35735 0.66 0.536672
Target:  5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3'
miRNA:   3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 35126 0.68 0.433825
Target:  5'- gGGCGcGGAUCGGAauCCGgCGCCacGGACg -3'
miRNA:   3'- gCCGU-UCUAGCCUacGGC-GCGG--CUUG- -5'
28023 5' -56.8 NC_005887.1 + 34250 0.7 0.351772
Target:  5'- uCGGCGAGcgCGGcgaGCUGCGCgCGcGCu -3'
miRNA:   3'- -GCCGUUCuaGCCua-CGGCGCG-GCuUG- -5'
28023 5' -56.8 NC_005887.1 + 33953 0.66 0.569258
Target:  5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3'
miRNA:   3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 33755 0.68 0.44361
Target:  5'- aCGGCGAGAgcuc--GCCaGCGUCGAACg -3'
miRNA:   3'- -GCCGUUCUagccuaCGG-CGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 33391 0.71 0.303502
Target:  5'- gCGGCAGGAugaggcucaUCGcGGUGCguagauacCGCGaCCGAGCa -3'
miRNA:   3'- -GCCGUUCU---------AGC-CUACG--------GCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 32788 0.67 0.493259
Target:  5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3'
miRNA:   3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 30329 0.66 0.558333
Target:  5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3'
miRNA:   3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.