Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28024 | 5' | -56.3 | NC_005887.1 | + | 27092 | 0.73 | 0.23946 |
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Target: 5'- cUCGCCGCGcagCacugcggcuGCCUGCUUcgggccgccguuguaGUCGGCg -3' miRNA: 3'- uAGCGGCGCaa-G---------UGGACGAA---------------CAGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 18778 | 0.73 | 0.236935 |
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Target: 5'- --aGUCGCGUUCGCaCUGCcgGcCGGCg -3' miRNA: 3'- uagCGGCGCAAGUG-GACGaaCaGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 26566 | 0.73 | 0.230717 |
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Target: 5'- uGUCGCUGcCGUcgUCcuCCUGCUUGUagaCGGCg -3' miRNA: 3'- -UAGCGGC-GCA--AGu-GGACGAACA---GCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 28567 | 0.73 | 0.230717 |
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Target: 5'- uUCGCgGCGgUgACCUGCUUcaCGGCg -3' miRNA: 3'- uAGCGgCGCaAgUGGACGAAcaGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 16334 | 0.73 | 0.212888 |
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Target: 5'- gGUCGCCGCGaacugcUUCAUCaGCUUGggaGGCu -3' miRNA: 3'- -UAGCGGCGC------AAGUGGaCGAACag-CCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 35835 | 0.75 | 0.15302 |
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Target: 5'- -gCGCCGCGUcggcguagaucaUCGCCUGCggaUUGcgcUCGGCa -3' miRNA: 3'- uaGCGGCGCA------------AGUGGACG---AAC---AGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 28021 | 1.1 | 0.000411 |
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Target: 5'- gAUCGCCGCGUUCACCUGCUUGUCGGCg -3' miRNA: 3'- -UAGCGGCGCAAGUGGACGAACAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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