Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28026 | 5' | -60.2 | NC_005887.1 | + | 601 | 0.66 | 0.409748 |
Target: 5'- uCGugGucUUCGaccagaGCCCGCGCGCcggGAUCg -3' miRNA: 3'- -GCugCu-AGGCga----CGGGCGCGCG---CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 11726 | 0.66 | 0.407013 |
Target: 5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3' miRNA: 3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41794 | 0.66 | 0.400675 |
Target: 5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3' miRNA: 3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 35653 | 0.66 | 0.400675 |
Target: 5'- -uGCGAgcucgaCGCUGUCgacauacagcaGCGCGCGAUCg -3' miRNA: 3'- gcUGCUag----GCGACGGg----------CGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 32731 | 0.66 | 0.400675 |
Target: 5'- aCGGCGGgguagCGCggcGCUCGCGUGCGcgCc -3' miRNA: 3'- -GCUGCUag---GCGa--CGGGCGCGCGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 22106 | 0.66 | 0.400675 |
Target: 5'- uGugGAaaCUGCUGCCgG-GUGCGAUUg -3' miRNA: 3'- gCugCUa-GGCGACGGgCgCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29515 | 0.66 | 0.400675 |
Target: 5'- aCGGCGggCgCGUUGUagaacagcacgUCGCGCGCGAc- -3' miRNA: 3'- -GCUGCuaG-GCGACG-----------GGCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 18948 | 0.66 | 0.391732 |
Target: 5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3' miRNA: 3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 16156 | 0.66 | 0.391732 |
Target: 5'- cCGGCGcgCCGa-GUgCGCGaGCGAUCg -3' miRNA: 3'- -GCUGCuaGGCgaCGgGCGCgCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28959 | 0.66 | 0.382919 |
Target: 5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3' miRNA: 3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 12423 | 0.66 | 0.382919 |
Target: 5'- aCGACa--CCGCgg--CGCGCGCGAUCg -3' miRNA: 3'- -GCUGcuaGGCGacggGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27831 | 0.66 | 0.374239 |
Target: 5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3' miRNA: 3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 13772 | 0.66 | 0.374239 |
Target: 5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3' miRNA: 3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 1421 | 0.66 | 0.374239 |
Target: 5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3' miRNA: 3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 33640 | 0.66 | 0.374239 |
Target: 5'- gCGACGAagCGCUuaCCGCcGCgGCgGAUCg -3' miRNA: 3'- -GCUGCUagGCGAcgGGCG-CG-CG-CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27241 | 0.66 | 0.373378 |
Target: 5'- gCGGCGcaacugcAUCgCGCgccgGCCCGCGuCGCcaauGAUCg -3' miRNA: 3'- -GCUGC-------UAG-GCGa---CGGGCGC-GCG----CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29310 | 0.67 | 0.365693 |
Target: 5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3' miRNA: 3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 25764 | 0.67 | 0.365693 |
Target: 5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3' miRNA: 3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41185 | 0.67 | 0.357283 |
Target: 5'- -cAUGAUCCGcCUGgcugcauccgaCCCGCGCGUcGUCg -3' miRNA: 3'- gcUGCUAGGC-GAC-----------GGGCGCGCGcUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41698 | 0.67 | 0.357283 |
Target: 5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3' miRNA: 3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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