Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28026 | 5' | -60.2 | NC_005887.1 | + | 26949 | 1.09 | 0.00024 |
Target: 5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3' miRNA: 3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 17407 | 0.76 | 0.084177 |
Target: 5'- aGGCGGcCCGCgcGCaCCGCGuCGCGAUCg -3' miRNA: 3'- gCUGCUaGGCGa-CG-GGCGC-GCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 18610 | 0.75 | 0.094158 |
Target: 5'- -uACGGUUCGUUGCUCGgcaGCGCGAUCg -3' miRNA: 3'- gcUGCUAGGCGACGGGCg--CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29178 | 0.75 | 0.091562 |
Target: 5'- uCGACcgcucCCGCUGUCUGCGCGCGcgCg -3' miRNA: 3'- -GCUGcua--GGCGACGGGCGCGCGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 5340 | 0.74 | 0.108213 |
Target: 5'- cCGACGuGUUCGCguacgGCCUGCGCGUGcUCg -3' miRNA: 3'- -GCUGC-UAGGCGa----CGGGCGCGCGCuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41730 | 0.74 | 0.111251 |
Target: 5'- gCGGCGAUCCGau-CCCgGCGCGCGggCu -3' miRNA: 3'- -GCUGCUAGGCgacGGG-CGCGCGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 40724 | 0.73 | 0.146311 |
Target: 5'- aGACGAcuucgaggUCGCcGCCCGCGUcgagGCGAUCg -3' miRNA: 3'- gCUGCUa-------GGCGaCGGGCGCG----CGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28648 | 0.73 | 0.134849 |
Target: 5'- cCGuuGAUCUGCUGgCCGCcCGUGGUCg -3' miRNA: 3'- -GCugCUAGGCGACgGGCGcGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 23280 | 0.72 | 0.150326 |
Target: 5'- uGGCGGUugCCGCaGCCCGCGC-CGAa- -3' miRNA: 3'- gCUGCUA--GGCGaCGGGCGCGcGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 15097 | 0.72 | 0.167401 |
Target: 5'- uGGCGA--CGCggGCCgGCGCGCGAUg -3' miRNA: 3'- gCUGCUagGCGa-CGGgCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 38059 | 0.71 | 0.201487 |
Target: 5'- uCGGCGAggaugUCGac-CUCGCGCGCGAUCa -3' miRNA: 3'- -GCUGCUa----GGCgacGGGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 32310 | 0.71 | 0.19991 |
Target: 5'- gCGACauGAUgCCGCUGUucgugccagcgcggCCGCGCGUGAUg -3' miRNA: 3'- -GCUG--CUA-GGCGACG--------------GGCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 39465 | 0.71 | 0.196272 |
Target: 5'- cCGACGuGUCCGUcgucGCCUGCGCGUuAUCc -3' miRNA: 3'- -GCUGC-UAGGCGa---CGGGCGCGCGcUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 25891 | 0.71 | 0.191175 |
Target: 5'- cCGcGCGGUCgagCGCaUGCCCGCGCGCa--- -3' miRNA: 3'- -GC-UGCUAG---GCG-ACGGGCGCGCGcuag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29595 | 0.7 | 0.217861 |
Target: 5'- aCGGCGGuguucUCgCGUUGCagCGCgGCGCGAUCg -3' miRNA: 3'- -GCUGCU-----AG-GCGACGg-GCG-CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 24881 | 0.7 | 0.235359 |
Target: 5'- gCGGCGG-CCGaUGCCgCGCGCuCGGUCu -3' miRNA: 3'- -GCUGCUaGGCgACGG-GCGCGcGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 4626 | 0.7 | 0.235359 |
Target: 5'- gCGGCG--CCGgUGgCCGCcgGCGCGAUCa -3' miRNA: 3'- -GCUGCuaGGCgACgGGCG--CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 22518 | 0.7 | 0.234757 |
Target: 5'- uCGGCGGUgaaucuguucaagCCGCUGCgcaugCCGUcCGCGAUCg -3' miRNA: 3'- -GCUGCUA-------------GGCGACG-----GGCGcGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27140 | 0.7 | 0.229399 |
Target: 5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3' miRNA: 3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 40903 | 0.7 | 0.223567 |
Target: 5'- aCGACGAgCCGCcgaagGCuaCCGCGCGCGc-- -3' miRNA: 3'- -GCUGCUaGGCGa----CG--GGCGCGCGCuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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