Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 3' | -54.7 | NC_005887.1 | + | 16509 | 0.67 | 0.595887 |
Target: 5'- aUGuCGCAggCCGAUCgCGUcGCCGccGGCGc -3' miRNA: 3'- gAC-GCGUa-GGCUAG-GCAaCGGU--UCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 13251 | 0.66 | 0.617421 |
Target: 5'- gCUGacCGCcgUCGAUUCGUUGCCGAucgacacaaaggcGCAg -3' miRNA: 3'- -GAC--GCGuaGGCUAGGCAACGGUU-------------CGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 37701 | 0.66 | 0.623099 |
Target: 5'- uCUGCGCGUCgcugagauccuugauCGcgCCGgcgGCCAccGGCGc -3' miRNA: 3'- -GACGCGUAG---------------GCuaGGCaa-CGGU--UCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 32465 | 0.66 | 0.641277 |
Target: 5'- aCUGCGCGgcgugcggaUCGAUCuCGUUGUagUAGGCAc -3' miRNA: 3'- -GACGCGUa--------GGCUAG-GCAACG--GUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 16858 | 0.66 | 0.652629 |
Target: 5'- -cGCGCcaucGUCCGAgccgCCGcugcguugUGCCcAAGCAa -3' miRNA: 3'- gaCGCG----UAGGCUa---GGCa-------ACGG-UUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 14242 | 0.66 | 0.663961 |
Target: 5'- -cGCgGCAUCCGAUCU--UGCCGccGGUc -3' miRNA: 3'- gaCG-CGUAGGCUAGGcaACGGU--UCGu -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 30624 | 0.65 | 0.671875 |
Target: 5'- -aGCGCGUCCGGcagaUCCGgaucguugaugcgacGCuCGAGCGu -3' miRNA: 3'- gaCGCGUAGGCU----AGGCaa-------------CG-GUUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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