miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 41950 0.74 0.125064
Target:  5'- cCCGGCGuGCUCGCGUGgugCGUGcGCGg -3'
miRNA:   3'- cGGCCGCuCGGGCGCGUa--GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 41617 0.72 0.155658
Target:  5'- gGCCGGCGcGGCCCGUgaggaucugcuGCGUC-UGcGCGg -3'
miRNA:   3'- -CGGCCGC-UCGGGCG-----------CGUAGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 41192 0.69 0.249498
Target:  5'- cGCCuGGCugcauccGA-CCCGCGCGUCGUcGUGCc -3'
miRNA:   3'- -CGG-CCG-------CUcGGGCGCGUAGUA-CACGc -5'
28031 5' -60 NC_005887.1 + 40866 0.67 0.344618
Target:  5'- cGCCGcGCGAGCgCCGCacgccgucgGCGUCGg--GCu -3'
miRNA:   3'- -CGGC-CGCUCG-GGCG---------CGUAGUacaCGc -5'
28031 5' -60 NC_005887.1 + 40859 0.67 0.368054
Target:  5'- aCCGGCGAagccGCCgCGCGCGUCGaagaagaaacGCGa -3'
miRNA:   3'- cGGCCGCU----CGG-GCGCGUAGUaca-------CGC- -5'
28031 5' -60 NC_005887.1 + 40778 0.66 0.405204
Target:  5'- cGCCGcCGAGCCgGCGgucgagguUCGUGgcgGCGa -3'
miRNA:   3'- -CGGCcGCUCGGgCGCgu------AGUACa--CGC- -5'
28031 5' -60 NC_005887.1 + 37848 0.71 0.198037
Target:  5'- aGUCGGCGAGCagaCGCGCG--AUGcGCGc -3'
miRNA:   3'- -CGGCCGCUCGg--GCGCGUagUACaCGC- -5'
28031 5' -60 NC_005887.1 + 37445 0.71 0.182895
Target:  5'- aGCgCGGCGcuuGCCUGCGCGguuugCA-GUGCGc -3'
miRNA:   3'- -CG-GCCGCu--CGGGCGCGUa----GUaCACGC- -5'
28031 5' -60 NC_005887.1 + 36996 0.75 0.10588
Target:  5'- cGCCGGCGAGCaCGCGCAggcCGUacGCGa -3'
miRNA:   3'- -CGGCCGCUCGgGCGCGUa--GUAcaCGC- -5'
28031 5' -60 NC_005887.1 + 36869 0.7 0.225702
Target:  5'- gGCCGGUGcugcgccaucGGCCUGCGuCGUgGUGgaUGCGg -3'
miRNA:   3'- -CGGCCGC----------UCGGGCGC-GUAgUAC--ACGC- -5'
28031 5' -60 NC_005887.1 + 34350 0.75 0.099845
Target:  5'- cGCCGGCcacggcuggagacGAGCgccCCGCGUAUCAgaGUGCGg -3'
miRNA:   3'- -CGGCCG-------------CUCG---GGCGCGUAGUa-CACGC- -5'
28031 5' -60 NC_005887.1 + 34256 0.69 0.243829
Target:  5'- aGCgCGGCGAGCUgCGCGCGcgcuuUCGUgaacgaccagacGUGCGc -3'
miRNA:   3'- -CG-GCCGCUCGG-GCGCGU-----AGUA------------CACGC- -5'
28031 5' -60 NC_005887.1 + 34122 0.67 0.361247
Target:  5'- uGCCGuucuCGAugcugaacaGCCCGCGCGUgUcgGUGCGc -3'
miRNA:   3'- -CGGCc---GCU---------CGGGCGCGUA-GuaCACGC- -5'
28031 5' -60 NC_005887.1 + 33260 0.67 0.344618
Target:  5'- cGCCGGU--GCCCGCGCuggCA--UGCa -3'
miRNA:   3'- -CGGCCGcuCGGGCGCGua-GUacACGc -5'
28031 5' -60 NC_005887.1 + 33190 0.68 0.313036
Target:  5'- gGCCGGaCGAGCCCguccagaugaacGCGCcgCAcUG-GCa -3'
miRNA:   3'- -CGGCC-GCUCGGG------------CGCGuaGU-ACaCGc -5'
28031 5' -60 NC_005887.1 + 33048 0.66 0.423706
Target:  5'- cGUCGGCGuuucgguGCCCGUaaccugcgGCGUCGccGUGCc -3'
miRNA:   3'- -CGGCCGCu------CGGGCG--------CGUAGUa-CACGc -5'
28031 5' -60 NC_005887.1 + 32438 0.67 0.364639
Target:  5'- gGCCGGCGgcgaucagguugcgcAGCCacuGCGCGgc--GUGCGg -3'
miRNA:   3'- -CGGCCGC---------------UCGGg--CGCGUaguaCACGC- -5'
28031 5' -60 NC_005887.1 + 32331 0.68 0.283696
Target:  5'- uGCCaGCGcGgCCGCGCGUgAUGUGg- -3'
miRNA:   3'- -CGGcCGCuCgGGCGCGUAgUACACgc -5'
28031 5' -60 NC_005887.1 + 31146 0.66 0.405204
Target:  5'- gGCCGuGCGcauacGCCUGCacCAUCGUGUcGCGc -3'
miRNA:   3'- -CGGC-CGCu----CGGGCGc-GUAGUACA-CGC- -5'
28031 5' -60 NC_005887.1 + 30977 0.67 0.360403
Target:  5'- uCCGGCugcgcuGAcGCCCGCGCugAUCAggcucagUGUGCu -3'
miRNA:   3'- cGGCCG------CU-CGGGCGCG--UAGU-------ACACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.