miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 33048 0.66 0.423706
Target:  5'- cGUCGGCGuuucgguGCCCGUaaccugcgGCGUCGccGUGCc -3'
miRNA:   3'- -CGGCCGCu------CGGGCG--------CGUAGUa-CACGc -5'
28031 5' -60 NC_005887.1 + 26872 0.68 0.298086
Target:  5'- cGCgCGGCcAGCUCGaaCGCGUCuugGUGCGc -3'
miRNA:   3'- -CG-GCCGcUCGGGC--GCGUAGua-CACGC- -5'
28031 5' -60 NC_005887.1 + 32331 0.68 0.283696
Target:  5'- uGCCaGCGcGgCCGCGCGUgAUGUGg- -3'
miRNA:   3'- -CGGcCGCuCgGGCGCGUAgUACACgc -5'
28031 5' -60 NC_005887.1 + 24391 1.1 0.000202
Target:  5'- uGCCGGCGAGCCCGCGCAUCAUGUGCGa -3'
miRNA:   3'- -CGGCCGCUCGGGCGCGUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 30143 0.66 0.414392
Target:  5'- uCCGGCGcGCCCGgCGCggCGcUGUccuucGCGg -3'
miRNA:   3'- cGGCCGCuCGGGC-GCGuaGU-ACA-----CGC- -5'
28031 5' -60 NC_005887.1 + 5371 0.66 0.405204
Target:  5'- cGCCGGCGAGCucgacCCGCGCGa-------- -3'
miRNA:   3'- -CGGCCGCUCG-----GGCGCGUaguacacgc -5'
28031 5' -60 NC_005887.1 + 27364 0.66 0.38722
Target:  5'- cGCCuGCG-GCCUGCGCggCcUGcGCGg -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGuaGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 29830 0.66 0.378427
Target:  5'- uGUCGGCGAGCuUCGC-CuUCGUcUGCGg -3'
miRNA:   3'- -CGGCCGCUCG-GGCGcGuAGUAcACGC- -5'
28031 5' -60 NC_005887.1 + 30977 0.67 0.360403
Target:  5'- uCCGGCugcgcuGAcGCCCGCGCugAUCAggcucagUGUGCu -3'
miRNA:   3'- cGGCCG------CU-CGGGCGCG--UAGU-------ACACGc -5'
28031 5' -60 NC_005887.1 + 27080 0.68 0.313036
Target:  5'- cGCCGGCGGacGCucgCCGCGCAgCAc-UGCGg -3'
miRNA:   3'- -CGGCCGCU--CG---GGCGCGUaGUacACGC- -5'
28031 5' -60 NC_005887.1 + 40866 0.67 0.344618
Target:  5'- cGCCGcGCGAGCgCCGCacgccgucgGCGUCGg--GCu -3'
miRNA:   3'- -CGGC-CGCUCG-GGCG---------CGUAGUacaCGc -5'
28031 5' -60 NC_005887.1 + 34122 0.67 0.361247
Target:  5'- uGCCGuucuCGAugcugaacaGCCCGCGCGUgUcgGUGCGc -3'
miRNA:   3'- -CGGCc---GCU---------CGGGCGCGUA-GuaCACGC- -5'
28031 5' -60 NC_005887.1 + 20545 0.66 0.423706
Target:  5'- cCCGGC-AGCgCCGCGgaCGUCGUGUugaugccgGCGa -3'
miRNA:   3'- cGGCCGcUCG-GGCGC--GUAGUACA--------CGC- -5'
28031 5' -60 NC_005887.1 + 33260 0.67 0.344618
Target:  5'- cGCCGGU--GCCCGCGCuggCA--UGCa -3'
miRNA:   3'- -CGGCCGcuCGGGCGCGua-GUacACGc -5'
28031 5' -60 NC_005887.1 + 9608 0.66 0.423706
Target:  5'- cGCCGGCgcgcacgcGAGCgCCGCGCuaccccgcCGUGgGUGa -3'
miRNA:   3'- -CGGCCG--------CUCG-GGCGCGua------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 26127 0.67 0.361247
Target:  5'- gGCCGGCGuaucgaucguGaCCUGCGUGUCcgGUcGCa -3'
miRNA:   3'- -CGGCCGCu---------C-GGGCGCGUAGuaCA-CGc -5'
28031 5' -60 NC_005887.1 + 28041 0.67 0.333309
Target:  5'- uGUCGGCGucGGCCUGCGCuugcggguucagCGUGaGCGu -3'
miRNA:   3'- -CGGCCGC--UCGGGCGCGua----------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 10058 0.68 0.298086
Target:  5'- cGCCGGCuGGCCCGaCG-AUCGccccGUGUGg -3'
miRNA:   3'- -CGGCCGcUCGGGC-GCgUAGUa---CACGC- -5'
28031 5' -60 NC_005887.1 + 2321 0.66 0.423706
Target:  5'- gGCCGGCcgccucGAG-CCGCGC--CAUGaUGCGc -3'
miRNA:   3'- -CGGCCG------CUCgGGCGCGuaGUAC-ACGC- -5'
28031 5' -60 NC_005887.1 + 17396 0.66 0.396146
Target:  5'- gGCCGcGCGcaaggcGGCCCGCGCG-CAccgcGUcGCGa -3'
miRNA:   3'- -CGGC-CGC------UCGGGCGCGUaGUa---CA-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.