miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 828 0.66 0.385648
Target:  5'- -uGCUcGCGCgAUcGCgGCCGCGaagaaagccaaggUGCCCg -3'
miRNA:   3'- ucUGA-CGCGgUA-CGaCGGCGC-------------ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 20538 0.66 0.385647
Target:  5'- cGGC-GCGCCcgGCagcGCCGCGgacgucguguugaUGCCg -3'
miRNA:   3'- uCUGaCGCGGuaCGa--CGGCGC-------------ACGGg -5'
28033 5' -60.3 NC_005887.1 + 30286 0.66 0.377689
Target:  5'- cGAC-GUGCCGaccUGCUGCagCGCGgcGCCUg -3'
miRNA:   3'- uCUGaCGCGGU---ACGACG--GCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 6631 0.66 0.377689
Target:  5'- cGACcGCGaCCGaGCUGCaCGCGUGgauCUCg -3'
miRNA:   3'- uCUGaCGC-GGUaCGACG-GCGCAC---GGG- -5'
28033 5' -60.3 NC_005887.1 + 744 0.66 0.377689
Target:  5'- cGGGCcGCGCCG-GCcGCCGCaccuggGCCg -3'
miRNA:   3'- -UCUGaCGCGGUaCGaCGGCGca----CGGg -5'
28033 5' -60.3 NC_005887.1 + 22601 0.66 0.360404
Target:  5'- cGugUGCGUguggaucGCUGCgCGCGUcGCCUa -3'
miRNA:   3'- uCugACGCGgua----CGACG-GCGCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 18931 0.66 0.357014
Target:  5'- cGGCUGCGacgagcugaucgaCGcGCUGCUGCGgcUGCCa -3'
miRNA:   3'- uCUGACGCg------------GUaCGACGGCGC--ACGGg -5'
28033 5' -60.3 NC_005887.1 + 40348 0.66 0.351971
Target:  5'- uGGACUG-GCCGUcgaGCgcgGCCGUGccGCUCg -3'
miRNA:   3'- -UCUGACgCGGUA---CGa--CGGCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 31383 0.66 0.351971
Target:  5'- cGAC-GCGCUcgGCguaGCggUGCGUGCCg -3'
miRNA:   3'- uCUGaCGCGGuaCGa--CG--GCGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 28725 0.66 0.35197
Target:  5'- cGGCUGagugcggcCGCCGcGC-GCCGCGcUGCCa -3'
miRNA:   3'- uCUGAC--------GCGGUaCGaCGGCGC-ACGGg -5'
28033 5' -60.3 NC_005887.1 + 13953 0.66 0.35197
Target:  5'- cGGCUGCGaCGUGCgcgugacgacaGCCGCGaaGCCg -3'
miRNA:   3'- uCUGACGCgGUACGa----------CGGCGCa-CGGg -5'
28033 5' -60.3 NC_005887.1 + 361 0.66 0.343678
Target:  5'- uGGGCcGCagGCCGUGCUGCUgauaggcgaGCGcGCCg -3'
miRNA:   3'- -UCUGaCG--CGGUACGACGG---------CGCaCGGg -5'
28033 5' -60.3 NC_005887.1 + 29970 0.66 0.343678
Target:  5'- uGACguuguuUGCGCgGUGCUGCUcgGCcUGCCa -3'
miRNA:   3'- uCUG------ACGCGgUACGACGG--CGcACGGg -5'
28033 5' -60.3 NC_005887.1 + 30145 0.66 0.335527
Target:  5'- cGGC-GCGCCcgGC-GCgGCGcUGUCCu -3'
miRNA:   3'- uCUGaCGCGGuaCGaCGgCGC-ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 395 0.66 0.335527
Target:  5'- aAGACgggcaaGCGCCGcgaagacGC-GCCGCGccGCCCg -3'
miRNA:   3'- -UCUGa-----CGCGGUa------CGaCGGCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 27657 0.67 0.327518
Target:  5'- ----cGCGCUGaGCUGCCGCGcGCgCg -3'
miRNA:   3'- ucugaCGCGGUaCGACGGCGCaCGgG- -5'
28033 5' -60.3 NC_005887.1 + 23436 0.67 0.327518
Target:  5'- gAGAUUcggugaGCGCUgcggGCUGCCG-GUGCCg -3'
miRNA:   3'- -UCUGA------CGCGGua--CGACGGCgCACGGg -5'
28033 5' -60.3 NC_005887.1 + 40132 0.67 0.327518
Target:  5'- cGACcggaUGCGCCA-GCcGCCcaucgguuuGCGcUGCCCg -3'
miRNA:   3'- uCUG----ACGCGGUaCGaCGG---------CGC-ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 24107 0.67 0.319652
Target:  5'- uGGCccuUG-GCCGUGCUG-CGCGUGUCg -3'
miRNA:   3'- uCUG---ACgCGGUACGACgGCGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 27647 0.67 0.319652
Target:  5'- -cGCcGCGCCcgGCccgcccGCCGCGacgaGCCCg -3'
miRNA:   3'- ucUGaCGCGGuaCGa-----CGGCGCa---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.