Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28033 | 5' | -60.3 | NC_005887.1 | + | 828 | 0.66 | 0.385648 |
Target: 5'- -uGCUcGCGCgAUcGCgGCCGCGaagaaagccaaggUGCCCg -3' miRNA: 3'- ucUGA-CGCGgUA-CGaCGGCGC-------------ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 20538 | 0.66 | 0.385647 |
Target: 5'- cGGC-GCGCCcgGCagcGCCGCGgacgucguguugaUGCCg -3' miRNA: 3'- uCUGaCGCGGuaCGa--CGGCGC-------------ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 30286 | 0.66 | 0.377689 |
Target: 5'- cGAC-GUGCCGaccUGCUGCagCGCGgcGCCUg -3' miRNA: 3'- uCUGaCGCGGU---ACGACG--GCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6631 | 0.66 | 0.377689 |
Target: 5'- cGACcGCGaCCGaGCUGCaCGCGUGgauCUCg -3' miRNA: 3'- uCUGaCGC-GGUaCGACG-GCGCAC---GGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 744 | 0.66 | 0.377689 |
Target: 5'- cGGGCcGCGCCG-GCcGCCGCaccuggGCCg -3' miRNA: 3'- -UCUGaCGCGGUaCGaCGGCGca----CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 22601 | 0.66 | 0.360404 |
Target: 5'- cGugUGCGUguggaucGCUGCgCGCGUcGCCUa -3' miRNA: 3'- uCugACGCGgua----CGACG-GCGCA-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 18931 | 0.66 | 0.357014 |
Target: 5'- cGGCUGCGacgagcugaucgaCGcGCUGCUGCGgcUGCCa -3' miRNA: 3'- uCUGACGCg------------GUaCGACGGCGC--ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 40348 | 0.66 | 0.351971 |
Target: 5'- uGGACUG-GCCGUcgaGCgcgGCCGUGccGCUCg -3' miRNA: 3'- -UCUGACgCGGUA---CGa--CGGCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 31383 | 0.66 | 0.351971 |
Target: 5'- cGAC-GCGCUcgGCguaGCggUGCGUGCCg -3' miRNA: 3'- uCUGaCGCGGuaCGa--CG--GCGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 28725 | 0.66 | 0.35197 |
Target: 5'- cGGCUGagugcggcCGCCGcGC-GCCGCGcUGCCa -3' miRNA: 3'- uCUGAC--------GCGGUaCGaCGGCGC-ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 13953 | 0.66 | 0.35197 |
Target: 5'- cGGCUGCGaCGUGCgcgugacgacaGCCGCGaaGCCg -3' miRNA: 3'- uCUGACGCgGUACGa----------CGGCGCa-CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 361 | 0.66 | 0.343678 |
Target: 5'- uGGGCcGCagGCCGUGCUGCUgauaggcgaGCGcGCCg -3' miRNA: 3'- -UCUGaCG--CGGUACGACGG---------CGCaCGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 29970 | 0.66 | 0.343678 |
Target: 5'- uGACguuguuUGCGCgGUGCUGCUcgGCcUGCCa -3' miRNA: 3'- uCUG------ACGCGgUACGACGG--CGcACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 30145 | 0.66 | 0.335527 |
Target: 5'- cGGC-GCGCCcgGC-GCgGCGcUGUCCu -3' miRNA: 3'- uCUGaCGCGGuaCGaCGgCGC-ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 395 | 0.66 | 0.335527 |
Target: 5'- aAGACgggcaaGCGCCGcgaagacGC-GCCGCGccGCCCg -3' miRNA: 3'- -UCUGa-----CGCGGUa------CGaCGGCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 27657 | 0.67 | 0.327518 |
Target: 5'- ----cGCGCUGaGCUGCCGCGcGCgCg -3' miRNA: 3'- ucugaCGCGGUaCGACGGCGCaCGgG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 23436 | 0.67 | 0.327518 |
Target: 5'- gAGAUUcggugaGCGCUgcggGCUGCCG-GUGCCg -3' miRNA: 3'- -UCUGA------CGCGGua--CGACGGCgCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 40132 | 0.67 | 0.327518 |
Target: 5'- cGACcggaUGCGCCA-GCcGCCcaucgguuuGCGcUGCCCg -3' miRNA: 3'- uCUG----ACGCGGUaCGaCGG---------CGC-ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 24107 | 0.67 | 0.319652 |
Target: 5'- uGGCccuUG-GCCGUGCUG-CGCGUGUCg -3' miRNA: 3'- uCUG---ACgCGGUACGACgGCGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 27647 | 0.67 | 0.319652 |
Target: 5'- -cGCcGCGCCcgGCccgcccGCCGCGacgaGCCCg -3' miRNA: 3'- ucUGaCGCGGuaCGa-----CGGCGCa---CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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