miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 40767 0.66 0.574441
Target:  5'- gGCGCgc--CGCGCgCCGcCGAGCcgGCGGu -3'
miRNA:   3'- -UGCGaauuGCGUG-GGCuGCUCG--CGCU- -5'
28038 3' -56 NC_005887.1 + 18369 0.66 0.618732
Target:  5'- cCGCguaGACgGCGCgCCGGCGcuCGCGAa -3'
miRNA:   3'- uGCGaa-UUG-CGUG-GGCUGCucGCGCU- -5'
28038 3' -56 NC_005887.1 + 12419 0.66 0.574441
Target:  5'- -gGC--AACGaCACCgCGGCGcGCGCGAu -3'
miRNA:   3'- ugCGaaUUGC-GUGG-GCUGCuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 3188 0.66 0.607618
Target:  5'- -aGCUgc-CGCGCCCGgacaGCGAGaagggcCGCGAg -3'
miRNA:   3'- ugCGAauuGCGUGGGC----UGCUC------GCGCU- -5'
28038 3' -56 NC_005887.1 + 17437 0.66 0.574441
Target:  5'- cGCGCUcgucgAGCGCuacgGCCCGAaucCGAcGCGCa- -3'
miRNA:   3'- -UGCGAa----UUGCG----UGGGCU---GCU-CGCGcu -5'
28038 3' -56 NC_005887.1 + 10213 0.66 0.585463
Target:  5'- cGCGUcgAugccCGCGCCgGACG-GCGCGu -3'
miRNA:   3'- -UGCGaaUu---GCGUGGgCUGCuCGCGCu -5'
28038 3' -56 NC_005887.1 + 32746 0.66 0.585463
Target:  5'- gGCGCUcgcguGCGCG-CCGGCGcGCGCc- -3'
miRNA:   3'- -UGCGAau---UGCGUgGGCUGCuCGCGcu -5'
28038 3' -56 NC_005887.1 + 41658 0.66 0.585463
Target:  5'- cACGCUucgucuacguUGGCGaGCCgGACGAagguagcgagcuGCGCGAg -3'
miRNA:   3'- -UGCGA----------AUUGCgUGGgCUGCU------------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 16229 0.66 0.596525
Target:  5'- cACGaucgauACGcCGgCCGGCGAGCGCa- -3'
miRNA:   3'- -UGCgaau--UGC-GUgGGCUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 7688 0.66 0.618732
Target:  5'- -gGUUcuucgGugGCGCCCGcaaguACGAGgGCGAu -3'
miRNA:   3'- ugCGAa----UugCGUGGGC-----UGCUCgCGCU- -5'
28038 3' -56 NC_005887.1 + 2454 0.66 0.607618
Target:  5'- uGCGCU--ACgGCGCCguCGACGAGgCGCu- -3'
miRNA:   3'- -UGCGAauUG-CGUGG--GCUGCUC-GCGcu -5'
28038 3' -56 NC_005887.1 + 4675 0.66 0.596525
Target:  5'- cCGCU--GCGCAgacggcgagggUCUGAUGGGCGCGc -3'
miRNA:   3'- uGCGAauUGCGU-----------GGGCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 9825 0.66 0.596525
Target:  5'- aACGCgu--CGCAgCCGGucAGCGCGGc -3'
miRNA:   3'- -UGCGaauuGCGUgGGCUgcUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40145 0.66 0.607618
Target:  5'- cGCGCU--GCGCGCCgCGcucgccGCGugugagcuGCGCGAc -3'
miRNA:   3'- -UGCGAauUGCGUGG-GC------UGCu-------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 15897 0.66 0.607618
Target:  5'- uGCGCUcGACGCGCagcuggCCGACcugcguuccGCGCGGg -3'
miRNA:   3'- -UGCGAaUUGCGUG------GGCUGcu-------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 18435 0.66 0.618732
Target:  5'- gACGCUgaucGGCGCGauCUCGACGcAG-GCGAa -3'
miRNA:   3'- -UGCGAa---UUGCGU--GGGCUGC-UCgCGCU- -5'
28038 3' -56 NC_005887.1 + 871 0.66 0.618732
Target:  5'- gACGCguggcccGCGcCGCCgGACGAGUcagGCGGc -3'
miRNA:   3'- -UGCGaau----UGC-GUGGgCUGCUCG---CGCU- -5'
28038 3' -56 NC_005887.1 + 27142 0.66 0.628746
Target:  5'- gGCGauc-ACGCGgCCGAacggccaCGGGCGCGGg -3'
miRNA:   3'- -UGCgaauUGCGUgGGCU-------GCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 28479 0.66 0.612062
Target:  5'- cCGCUUcagcucgacgaaguaGACGCGCgCCGGCGGGaagaugacgaUGCGGu -3'
miRNA:   3'- uGCGAA---------------UUGCGUG-GGCUGCUC----------GCGCU- -5'
28038 3' -56 NC_005887.1 + 33645 0.66 0.596525
Target:  5'- aGCGCgcgcUGCGCUCGGCGAGgGUu- -3'
miRNA:   3'- -UGCGaauuGCGUGGGCUGCUCgCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.