miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 20359 1.09 0.000657
Target:  5'- gACGCUUAACGCACCCGACGAGCGCGAa -3'
miRNA:   3'- -UGCGAAUUGCGUGGGCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 24901 0.79 0.094912
Target:  5'- uGCGCgucgGAUucgggccguaGCGCUCGACGAGCGCGAu -3'
miRNA:   3'- -UGCGaa--UUG----------CGUGGGCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 18123 0.79 0.100525
Target:  5'- cGCGCUguACGCAaCCGGCGAaGCGCGGg -3'
miRNA:   3'- -UGCGAauUGCGUgGGCUGCU-CGCGCU- -5'
28038 3' -56 NC_005887.1 + 15018 0.78 0.106449
Target:  5'- uGCGCgUGGCGCagucgacgugGCCgGACGAGUGCGAg -3'
miRNA:   3'- -UGCGaAUUGCG----------UGGgCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 14066 0.76 0.1494
Target:  5'- gACGCUgcGCGCGCUCGGCGuGC-CGAu -3'
miRNA:   3'- -UGCGAauUGCGUGGGCUGCuCGcGCU- -5'
28038 3' -56 NC_005887.1 + 8860 0.75 0.176358
Target:  5'- aACGCc-GGCGCGCCCGuCGAGauCGCGAc -3'
miRNA:   3'- -UGCGaaUUGCGUGGGCuGCUC--GCGCU- -5'
28038 3' -56 NC_005887.1 + 989 0.75 0.181252
Target:  5'- cUGCUcgAACGCuuCCCGGCGGcGCGCGGa -3'
miRNA:   3'- uGCGAa-UUGCGu-GGGCUGCU-CGCGCU- -5'
28038 3' -56 NC_005887.1 + 30134 0.75 0.186266
Target:  5'- gGCGUgaaauccGGCGCGCCCGGCGcGGCGCu- -3'
miRNA:   3'- -UGCGaa-----UUGCGUGGGCUGC-UCGCGcu -5'
28038 3' -56 NC_005887.1 + 2420 0.75 0.196661
Target:  5'- uGCGCgucgucGACGCGCCCGGCucgaucuGCGCGGc -3'
miRNA:   3'- -UGCGaa----UUGCGUGGGCUGcu-----CGCGCU- -5'
28038 3' -56 NC_005887.1 + 34241 0.74 0.2132
Target:  5'- -aGCg--GCGC-CUCGGCGAGCGCGGc -3'
miRNA:   3'- ugCGaauUGCGuGGGCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 35054 0.74 0.218974
Target:  5'- uACGCgagguCGCugCCGucgucgGCGGGCGCGAc -3'
miRNA:   3'- -UGCGaauu-GCGugGGC------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40951 0.73 0.237099
Target:  5'- cCGCUgccgAGCGgGCCCaugaugaACGAGCGCGAc -3'
miRNA:   3'- uGCGAa---UUGCgUGGGc------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 27018 0.73 0.2632
Target:  5'- uCGUgu-GCGCAaCCuCGGCGAGCGCGc -3'
miRNA:   3'- uGCGaauUGCGU-GG-GCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 29736 0.72 0.277104
Target:  5'- cACGCgccGCGCgugcacggucuuGCCCGGCGAGCugaucGCGAg -3'
miRNA:   3'- -UGCGaauUGCG------------UGGGCUGCUCG-----CGCU- -5'
28038 3' -56 NC_005887.1 + 37332 0.72 0.29905
Target:  5'- -gGCUUcggucUGCGCCuCGGCGGGCGUGAg -3'
miRNA:   3'- ugCGAAuu---GCGUGG-GCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 1679 0.71 0.306658
Target:  5'- cGCGCUcGAuCGC-CCCGAgcaCGAGCGCa- -3'
miRNA:   3'- -UGCGAaUU-GCGuGGGCU---GCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 30030 0.71 0.314414
Target:  5'- aACGCgccGACGcCACCCucauaGGCGAGCGCc- -3'
miRNA:   3'- -UGCGaa-UUGC-GUGGG-----CUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 18027 0.71 0.322316
Target:  5'- cGCGCUUAcGCGCGCcggacugacggCCGACGAuuGgGCGAu -3'
miRNA:   3'- -UGCGAAU-UGCGUG-----------GGCUGCU--CgCGCU- -5'
28038 3' -56 NC_005887.1 + 20528 0.7 0.355399
Target:  5'- cCGUUUcauucGGCGCGCCCGGC-AGCGCc- -3'
miRNA:   3'- uGCGAA-----UUGCGUGGGCUGcUCGCGcu -5'
28038 3' -56 NC_005887.1 + 1416 0.7 0.372815
Target:  5'- uGCGCUcGGCGUugCCGaacucgguGCGcGCGCGGu -3'
miRNA:   3'- -UGCGAaUUGCGugGGC--------UGCuCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.