miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 14522 0.68 0.499076
Target:  5'- cCGCUUGcagGCGCGgCCGuCGgcGGCGCGu -3'
miRNA:   3'- uGCGAAU---UGCGUgGGCuGC--UCGCGCu -5'
28038 3' -56 NC_005887.1 + 635 0.69 0.438165
Target:  5'- cCGCgaugaaaGCGCgCGGCGAGCGCa- -3'
miRNA:   3'- uGCGaauug--CGUGgGCUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 1278 0.69 0.448027
Target:  5'- cCGCcUAGC-UACCuuuuCGACGGGCGCGAc -3'
miRNA:   3'- uGCGaAUUGcGUGG----GCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 16458 0.68 0.458011
Target:  5'- cGCGCgggcAUGCGCUCGACc-GCGCGGc -3'
miRNA:   3'- -UGCGaau-UGCGUGGGCUGcuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 321 0.68 0.468112
Target:  5'- uGCGC---GCGUACaCCGAgGAaguGCGCGAg -3'
miRNA:   3'- -UGCGaauUGCGUG-GGCUgCU---CGCGCU- -5'
28038 3' -56 NC_005887.1 + 30853 0.68 0.468112
Target:  5'- cGCGCaugUUGAUGCGcugguCCUGAUgccaGAGCGCGAg -3'
miRNA:   3'- -UGCG---AAUUGCGU-----GGGCUG----CUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40946 0.68 0.478326
Target:  5'- aACGCcgAGCGCauGCUCGACcgcuucGGCGCGGg -3'
miRNA:   3'- -UGCGaaUUGCG--UGGGCUGc-----UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 8456 0.68 0.488649
Target:  5'- aACGCgaucgaGCGCCCGGCGcaaccgcucGGCGaCGAc -3'
miRNA:   3'- -UGCGaauug-CGUGGGCUGC---------UCGC-GCU- -5'
28038 3' -56 NC_005887.1 + 12198 0.68 0.488649
Target:  5'- cCGCgaagGACaGCGCCgCGcCGGGCGCGc -3'
miRNA:   3'- uGCGaa--UUG-CGUGG-GCuGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 546 0.69 0.438165
Target:  5'- cGCGCgc--CGCGCCgGAUacAGCGCGAa -3'
miRNA:   3'- -UGCGaauuGCGUGGgCUGc-UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 23956 0.7 0.394467
Target:  5'- uGCGC---ACGCACCgaCGAccucggcccacugcuCGAGCGCGAg -3'
miRNA:   3'- -UGCGaauUGCGUGG--GCU---------------GCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 27351 0.7 0.381738
Target:  5'- cGCGCagcGGCGCGCa-GACGAGCGuCGGc -3'
miRNA:   3'- -UGCGaa-UUGCGUGggCUGCUCGC-GCU- -5'
28038 3' -56 NC_005887.1 + 8860 0.75 0.176358
Target:  5'- aACGCc-GGCGCGCCCGuCGAGauCGCGAc -3'
miRNA:   3'- -UGCGaaUUGCGUGGGCuGCUC--GCGCU- -5'
28038 3' -56 NC_005887.1 + 35054 0.74 0.218974
Target:  5'- uACGCgagguCGCugCCGucgucgGCGGGCGCGAc -3'
miRNA:   3'- -UGCGaauu-GCGugGGC------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 27018 0.73 0.2632
Target:  5'- uCGUgu-GCGCAaCCuCGGCGAGCGCGc -3'
miRNA:   3'- uGCGaauUGCGU-GG-GCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 29736 0.72 0.277104
Target:  5'- cACGCgccGCGCgugcacggucuuGCCCGGCGAGCugaucGCGAg -3'
miRNA:   3'- -UGCGaauUGCG------------UGGGCUGCUCG-----CGCU- -5'
28038 3' -56 NC_005887.1 + 1679 0.71 0.306658
Target:  5'- cGCGCUcGAuCGC-CCCGAgcaCGAGCGCa- -3'
miRNA:   3'- -UGCGAaUU-GCGuGGGCU---GCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 30030 0.71 0.314414
Target:  5'- aACGCgccGACGcCACCCucauaGGCGAGCGCc- -3'
miRNA:   3'- -UGCGaa-UUGC-GUGGG-----CUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 18027 0.71 0.322316
Target:  5'- cGCGCUUAcGCGCGCcggacugacggCCGACGAuuGgGCGAu -3'
miRNA:   3'- -UGCGAAU-UGCGUG-----------GGCUGCU--CgCGCU- -5'
28038 3' -56 NC_005887.1 + 13447 0.7 0.381738
Target:  5'- cCGCUcagcACGUucauCCUGACGGGCGCGc -3'
miRNA:   3'- uGCGAau--UGCGu---GGGCUGCUCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.