miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 321 0.68 0.468112
Target:  5'- uGCGC---GCGUACaCCGAgGAaguGCGCGAg -3'
miRNA:   3'- -UGCGaauUGCGUG-GGCUgCU---CGCGCU- -5'
28038 3' -56 NC_005887.1 + 546 0.69 0.438165
Target:  5'- cGCGCgc--CGCGCCgGAUacAGCGCGAa -3'
miRNA:   3'- -UGCGaauuGCGUGGgCUGc-UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 635 0.69 0.438165
Target:  5'- cCGCgaugaaaGCGCgCGGCGAGCGCa- -3'
miRNA:   3'- uGCGaauug--CGUGgGCUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 871 0.66 0.618732
Target:  5'- gACGCguggcccGCGcCGCCgGACGAGUcagGCGGc -3'
miRNA:   3'- -UGCGaau----UGC-GUGGgCUGCUCG---CGCU- -5'
28038 3' -56 NC_005887.1 + 989 0.75 0.181252
Target:  5'- cUGCUcgAACGCuuCCCGGCGGcGCGCGGa -3'
miRNA:   3'- uGCGAa-UUGCGu-GGGCUGCU-CGCGCU- -5'
28038 3' -56 NC_005887.1 + 1278 0.69 0.448027
Target:  5'- cCGCcUAGC-UACCuuuuCGACGGGCGCGAc -3'
miRNA:   3'- uGCGaAUUGcGUGG----GCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 1416 0.7 0.372815
Target:  5'- uGCGCUcGGCGUugCCGaacucgguGCGcGCGCGGu -3'
miRNA:   3'- -UGCGAaUUGCGugGGC--------UGCuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 1594 0.67 0.520216
Target:  5'- gGCGCgcGGCGCGCCaaCGGCGAuCGCc- -3'
miRNA:   3'- -UGCGaaUUGCGUGG--GCUGCUcGCGcu -5'
28038 3' -56 NC_005887.1 + 1679 0.71 0.306658
Target:  5'- cGCGCUcGAuCGC-CCCGAgcaCGAGCGCa- -3'
miRNA:   3'- -UGCGAaUU-GCGuGGGCU---GCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 1784 0.67 0.520216
Target:  5'- uUGCUcgAGCGCGCCgaGAacuCGuGCGCGAg -3'
miRNA:   3'- uGCGAa-UUGCGUGGg-CU---GCuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 2192 0.7 0.400006
Target:  5'- cGCGC--AGCucaCACgCGGCGAGCGCGGc -3'
miRNA:   3'- -UGCGaaUUGc--GUGgGCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 2420 0.75 0.196661
Target:  5'- uGCGCgucgucGACGCGCCCGGCucgaucuGCGCGGc -3'
miRNA:   3'- -UGCGaa----UUGCGUGGGCUGcu-----CGCGCU- -5'
28038 3' -56 NC_005887.1 + 2454 0.66 0.607618
Target:  5'- uGCGCU--ACgGCGCCguCGACGAGgCGCu- -3'
miRNA:   3'- -UGCGAauUG-CGUGG--GCUGCUC-GCGcu -5'
28038 3' -56 NC_005887.1 + 3188 0.66 0.607618
Target:  5'- -aGCUgc-CGCGCCCGgacaGCGAGaagggcCGCGAg -3'
miRNA:   3'- ugCGAauuGCGUGGGC----UGCUC------GCGCU- -5'
28038 3' -56 NC_005887.1 + 4247 0.68 0.503274
Target:  5'- gACGCUcggccgcACGCagucugaacugcucgGCCCGAUGAucgcGCGCGAg -3'
miRNA:   3'- -UGCGAau-----UGCG---------------UGGGCUGCU----CGCGCU- -5'
28038 3' -56 NC_005887.1 + 4400 0.68 0.5096
Target:  5'- -gGC--AAUGCGCgCCGGCGAagGCGCGGc -3'
miRNA:   3'- ugCGaaUUGCGUG-GGCUGCU--CGCGCU- -5'
28038 3' -56 NC_005887.1 + 4675 0.66 0.596525
Target:  5'- cCGCU--GCGCAgacggcgagggUCUGAUGGGCGCGc -3'
miRNA:   3'- uGCGAauUGCGU-----------GGGCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 4746 0.68 0.4773
Target:  5'- uGCGCgUGACGCGCgcaCUGACGAGauccgaauuccgcCGCGGc -3'
miRNA:   3'- -UGCGaAUUGCGUG---GGCUGCUC-------------GCGCU- -5'
28038 3' -56 NC_005887.1 + 4925 0.68 0.498028
Target:  5'- cGCGCUccacucCGCACCUGGCGugcaggcAGuCGCGAc -3'
miRNA:   3'- -UGCGAauu---GCGUGGGCUGC-------UC-GCGCU- -5'
28038 3' -56 NC_005887.1 + 5136 0.67 0.563467
Target:  5'- -gGCaUGaccGCGCuGCCCGACGucGGCGCGc -3'
miRNA:   3'- ugCGaAU---UGCG-UGGGCUGC--UCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.