miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 42077 0.67 0.55255
Target:  5'- uCGacgAGCGCugUcgCGugGGGCGCGAu -3'
miRNA:   3'- uGCgaaUUGCGugG--GCugCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 41805 0.66 0.574441
Target:  5'- cGCGCU----GUAUCCGGCGcGGCGCGc -3'
miRNA:   3'- -UGCGAauugCGUGGGCUGC-UCGCGCu -5'
28038 3' -56 NC_005887.1 + 41658 0.66 0.585463
Target:  5'- cACGCUucgucuacguUGGCGaGCCgGACGAagguagcgagcuGCGCGAg -3'
miRNA:   3'- -UGCGA----------AUUGCgUGGgCUGCU------------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 41191 0.67 0.520216
Target:  5'- cCGCcUGGCuGCAUCCGACccGCGCGu -3'
miRNA:   3'- uGCGaAUUG-CGUGGGCUGcuCGCGCu -5'
28038 3' -56 NC_005887.1 + 40951 0.73 0.237099
Target:  5'- cCGCUgccgAGCGgGCCCaugaugaACGAGCGCGAc -3'
miRNA:   3'- uGCGAa---UUGCgUGGGc------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40946 0.68 0.478326
Target:  5'- aACGCcgAGCGCauGCUCGACcgcuucGGCGCGGg -3'
miRNA:   3'- -UGCGaaUUGCG--UGGGCUGc-----UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40767 0.66 0.574441
Target:  5'- gGCGCgc--CGCGCgCCGcCGAGCcgGCGGu -3'
miRNA:   3'- -UGCGaauuGCGUG-GGCuGCUCG--CGCU- -5'
28038 3' -56 NC_005887.1 + 40668 0.69 0.409346
Target:  5'- uGCGCU---CGUGCUCGGggcgauCGAGCGCGAu -3'
miRNA:   3'- -UGCGAauuGCGUGGGCU------GCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40428 0.67 0.563467
Target:  5'- cACGCaUGACGcCGCCCGGCu-GC-CGAa -3'
miRNA:   3'- -UGCGaAUUGC-GUGGGCUGcuCGcGCU- -5'
28038 3' -56 NC_005887.1 + 40145 0.66 0.607618
Target:  5'- cGCGCU--GCGCGCCgCGcucgccGCGugugagcuGCGCGAc -3'
miRNA:   3'- -UGCGAauUGCGUGG-GC------UGCu-------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 37332 0.72 0.29905
Target:  5'- -gGCUUcggucUGCGCCuCGGCGGGCGUGAg -3'
miRNA:   3'- ugCGAAuu---GCGUGG-GCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 35123 0.66 0.596525
Target:  5'- uUGgUcGAUGCGCCCGACGccgacAGCGCc- -3'
miRNA:   3'- uGCgAaUUGCGUGGGCUGC-----UCGCGcu -5'
28038 3' -56 NC_005887.1 + 35054 0.74 0.218974
Target:  5'- uACGCgagguCGCugCCGucgucgGCGGGCGCGAc -3'
miRNA:   3'- -UGCGaauu-GCGugGGC------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 34916 0.68 0.468112
Target:  5'- gACGCgc-ACGCcaGCCCaaacgaggcggcGGCGGGUGCGAc -3'
miRNA:   3'- -UGCGaauUGCG--UGGG------------CUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 34241 0.74 0.2132
Target:  5'- -aGCg--GCGC-CUCGGCGAGCGCGGc -3'
miRNA:   3'- ugCGaauUGCGuGGGCUGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 33645 0.66 0.596525
Target:  5'- aGCGCgcgcUGCGCUCGGCGAGgGUu- -3'
miRNA:   3'- -UGCGaauuGCGUGGGCUGCUCgCGcu -5'
28038 3' -56 NC_005887.1 + 33475 0.7 0.390802
Target:  5'- aGCGCguacGGCGUcgcgauCUCGACGGGCGCGc -3'
miRNA:   3'- -UGCGaa--UUGCGu-----GGGCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 32746 0.66 0.585463
Target:  5'- gGCGCUcgcguGCGCG-CCGGCGcGCGCc- -3'
miRNA:   3'- -UGCGAau---UGCGUgGGCUGCuCGCGcu -5'
28038 3' -56 NC_005887.1 + 32156 0.69 0.448027
Target:  5'- gACGC--GACGCACUCGACGAaaccguuCGCGu -3'
miRNA:   3'- -UGCGaaUUGCGUGGGCUGCUc------GCGCu -5'
28038 3' -56 NC_005887.1 + 30853 0.68 0.468112
Target:  5'- cGCGCaugUUGAUGCGcugguCCUGAUgccaGAGCGCGAg -3'
miRNA:   3'- -UGCG---AAUUGCGU-----GGGCUG----CUCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.