miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28046 5' -59.1 NC_005887.1 + 16472 0.65 0.415965
Target:  5'- cUCGACCGCGCGgcaggauccgGCGGgcuggucggcgaugUCGCAGGc- -3'
miRNA:   3'- aAGCUGGUGCGCa---------CGCC--------------GGCGUUCua -5'
28046 5' -59.1 NC_005887.1 + 5355 0.66 0.409346
Target:  5'- -aCGGCCuGCGCGUGCucGCCgGCGAGc- -3'
miRNA:   3'- aaGCUGG-UGCGCACGc-CGG-CGUUCua -5'
28046 5' -59.1 NC_005887.1 + 8538 0.66 0.409346
Target:  5'- -cCGACCugacaccCGCGUgGUGGCCGUggGu- -3'
miRNA:   3'- aaGCUGGu------GCGCA-CGCCGGCGuuCua -5'
28046 5' -59.1 NC_005887.1 + 12660 0.66 0.409346
Target:  5'- -gUGGCUGCGCGUGCaGCUGcCAAGc- -3'
miRNA:   3'- aaGCUGGUGCGCACGcCGGC-GUUCua -5'
28046 5' -59.1 NC_005887.1 + 827 0.66 0.409346
Target:  5'- -aUGcUCGCGCGaucGCGGCCGCgAAGAa -3'
miRNA:   3'- aaGCuGGUGCGCa--CGCCGGCG-UUCUa -5'
28046 5' -59.1 NC_005887.1 + 11551 0.66 0.409346
Target:  5'- cUCGGCgcgcaGCGCGcgGCGGUCGC-GGAa -3'
miRNA:   3'- aAGCUGg----UGCGCa-CGCCGGCGuUCUa -5'
28046 5' -59.1 NC_005887.1 + 10715 0.66 0.409346
Target:  5'- aUgGACCGCGCgGUGCcGCUGUucGAUg -3'
miRNA:   3'- aAgCUGGUGCG-CACGcCGGCGuuCUA- -5'
28046 5' -59.1 NC_005887.1 + 18391 0.66 0.400005
Target:  5'- gUgGGCCGaggucgucggUGCGUGCgcagacGGCCGCGAGGc -3'
miRNA:   3'- aAgCUGGU----------GCGCACG------CCGGCGUUCUa -5'
28046 5' -59.1 NC_005887.1 + 27338 0.66 0.390802
Target:  5'- gUCGacugcGCCACGCGcaGCGGCgCGCA-GAc -3'
miRNA:   3'- aAGC-----UGGUGCGCa-CGCCG-GCGUuCUa -5'
28046 5' -59.1 NC_005887.1 + 39792 0.66 0.390802
Target:  5'- -aCGGCCAUGCG-GCGGaaGCAGu-- -3'
miRNA:   3'- aaGCUGGUGCGCaCGCCggCGUUcua -5'
28046 5' -59.1 NC_005887.1 + 41279 0.66 0.390802
Target:  5'- gUCGACCugcgcacggGCGCGcUGCuGCCGCcGGGc -3'
miRNA:   3'- aAGCUGG---------UGCGC-ACGcCGGCGuUCUa -5'
28046 5' -59.1 NC_005887.1 + 17179 0.66 0.390802
Target:  5'- --gGAgCGCGCGaacGCGGCCGCAc--- -3'
miRNA:   3'- aagCUgGUGCGCa--CGCCGGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 7196 0.66 0.381738
Target:  5'- aUCGugCA-GCGUGaCGGCCGCc---- -3'
miRNA:   3'- aAGCugGUgCGCAC-GCCGGCGuucua -5'
28046 5' -59.1 NC_005887.1 + 5896 0.66 0.381738
Target:  5'- cUUGACCGCuGCGgGCuGGCCgaaggGCAAGAa -3'
miRNA:   3'- aAGCUGGUG-CGCaCG-CCGG-----CGUUCUa -5'
28046 5' -59.1 NC_005887.1 + 41590 0.67 0.364035
Target:  5'- gUCGGCCA-GCG-GCGGCC-CAGGu- -3'
miRNA:   3'- aAGCUGGUgCGCaCGCCGGcGUUCua -5'
28046 5' -59.1 NC_005887.1 + 25942 0.67 0.362296
Target:  5'- cUCGGCCGCGUGagcuuccggccgGCGGCCGUcucGAc -3'
miRNA:   3'- aAGCUGGUGCGCa-----------CGCCGGCGuu-CUa -5'
28046 5' -59.1 NC_005887.1 + 13951 0.67 0.355399
Target:  5'- cUCGGCUGCGaCGUGCGcgugacgacaGCCGCGAa-- -3'
miRNA:   3'- aAGCUGGUGC-GCACGC----------CGGCGUUcua -5'
28046 5' -59.1 NC_005887.1 + 13624 0.67 0.338564
Target:  5'- -gCGG-CGCGCG-GCGGCCGCAc--- -3'
miRNA:   3'- aaGCUgGUGCGCaCGCCGGCGUucua -5'
28046 5' -59.1 NC_005887.1 + 27532 0.67 0.338564
Target:  5'- -cCG-CCAUcaGCGUcGCGGCCGCcAGAUu -3'
miRNA:   3'- aaGCuGGUG--CGCA-CGCCGGCGuUCUA- -5'
28046 5' -59.1 NC_005887.1 + 17813 0.67 0.322316
Target:  5'- -cCGGCCGaagGUGCGGCCGCGcguGAUg -3'
miRNA:   3'- aaGCUGGUgcgCACGCCGGCGUu--CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.