miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 9139 0.66 0.286884
Target:  5'- aCCGAGUGCcaguGCGGCGcguUCaucuggacgGGCUcguccgGCCGCUa -3'
miRNA:   3'- -GGCUCGCG----CGCCGU---AG---------CCGG------CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 12309 0.66 0.286884
Target:  5'- gCUG-GCGCucgccuaugaggGUGGCGUCGGCgCGuUCGUCa -3'
miRNA:   3'- -GGCuCGCG------------CGCCGUAGCCG-GC-GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 34648 0.66 0.286884
Target:  5'- aCGAgGCGCGcCGGCuugcCGGuuuCCGgauCCGCCa -3'
miRNA:   3'- gGCU-CGCGC-GCCGua--GCC---GGC---GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 30637 0.66 0.286884
Target:  5'- gCCGuGCGCGCGGCGaagCGaucUUGCgaCGCCu -3'
miRNA:   3'- -GGCuCGCGCGCCGUa--GCc--GGCG--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 15623 0.66 0.286884
Target:  5'- aUCGuGCGCcCGGUcuauGUCGaGCUGCCcgcgGCCg -3'
miRNA:   3'- -GGCuCGCGcGCCG----UAGC-CGGCGG----CGG- -5'
28047 3' -64.2 NC_005887.1 + 27418 0.66 0.280104
Target:  5'- aCGgcAGCGCGCGGCGUgcGUCGaUCGCg -3'
miRNA:   3'- gGC--UCGCGCGCCGUAgcCGGC-GGCGg -5'
28047 3' -64.2 NC_005887.1 + 17272 0.66 0.280104
Target:  5'- gCCGGGCGagacgucggGCGGCGcCGcGCgCGCaaaCGCCg -3'
miRNA:   3'- -GGCUCGCg--------CGCCGUaGC-CG-GCG---GCGG- -5'
28047 3' -64.2 NC_005887.1 + 24539 0.66 0.280104
Target:  5'- ----aCGCGCGGCcgcaccuUCGGCCgGgCGCCc -3'
miRNA:   3'- ggcucGCGCGCCGu------AGCCGG-CgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 25942 0.66 0.280104
Target:  5'- cUCGGcCGCGUGaGCuucCGGCCgGCgGCCg -3'
miRNA:   3'- -GGCUcGCGCGC-CGua-GCCGG-CGgCGG- -5'
28047 3' -64.2 NC_005887.1 + 38165 0.66 0.280104
Target:  5'- gCCGAGCGCGaaauaGGCGgugugcagcaUGGCCgGCUcaauacccgaGCCa -3'
miRNA:   3'- -GGCUCGCGCg----CCGUa---------GCCGG-CGG----------CGG- -5'
28047 3' -64.2 NC_005887.1 + 23444 0.66 0.280104
Target:  5'- gUGAGCGCuGCGGg--CuGCCGgUGCCg -3'
miRNA:   3'- gGCUCGCG-CGCCguaGcCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 41941 0.66 0.278094
Target:  5'- gCUGAGCugcccggcgugcucGCGUGGUgcgugcgCGGCgCGCuCGCCu -3'
miRNA:   3'- -GGCUCG--------------CGCGCCGua-----GCCG-GCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 821 0.66 0.277427
Target:  5'- gCCGAGCGCcucGCGGaucuugccgagcacCGUCGacuugccguucgaGCCGgUGCCa -3'
miRNA:   3'- -GGCUCGCG---CGCC--------------GUAGC-------------CGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 40841 0.66 0.273451
Target:  5'- uCCGGGUaCGUGuuccGCA-CGGCCG-CGCCg -3'
miRNA:   3'- -GGCUCGcGCGC----CGUaGCCGGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 32837 0.66 0.273451
Target:  5'- gUGAGCGUGacgacgguguuCGGCAgcaugccggggUCGGCCgggucguucGUCGCCa -3'
miRNA:   3'- gGCUCGCGC-----------GCCGU-----------AGCCGG---------CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 27095 0.66 0.273451
Target:  5'- gCCGcGCaGCacuGCGGCugccugcuUCgGGCCGCCGUUg -3'
miRNA:   3'- -GGCuCG-CG---CGCCGu-------AG-CCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 14600 0.66 0.273451
Target:  5'- gUCGGuacGCGUaCGGcCGUCGG-CGCCGUCg -3'
miRNA:   3'- -GGCU---CGCGcGCC-GUAGCCgGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 13134 0.66 0.273451
Target:  5'- cUCGAGCGUGCcgGGCcUCGuCuCGUCGCUu -3'
miRNA:   3'- -GGCUCGCGCG--CCGuAGCcG-GCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 37751 0.66 0.272793
Target:  5'- gCGAGCaucuguugcaucuGCGCGGCcugcgccUCGGCgGCuugcugCGCCu -3'
miRNA:   3'- gGCUCG-------------CGCGCCGu------AGCCGgCG------GCGG- -5'
28047 3' -64.2 NC_005887.1 + 33196 0.66 0.27148
Target:  5'- aCGAGCccguccagaugaacGCGCcgcacuGGCAcUCGGUCG-CGCCg -3'
miRNA:   3'- gGCUCG--------------CGCG------CCGU-AGCCGGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.